Gene detail

Detail information of GWHGAAZE025464

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010660689.1	0	PREDICTED: aspartokinase 2, chloroplastic isoform X1 [Vitis vinifera]
COG	YP_001996257.1	2E-90	aspartate kinase III
Swissprot	tr\|O23653\|AK2_ARATH	0	Aspartokinase 2, chloroplastic (Precursor)
trEMBL	tr\|F6H434\|F6H434_VITVI	0	Aspartokinase {ECO:0000256\|RuleBase:RU003448}
TAIR10	AT5G14060.2	0	Aspartate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61656078	61660841	+
GWHAAZE00000007	mRNA	61656078	61660841	+
GWHAAZE00000007	exon	61656078	61656479	+
GWHAAZE00000007	exon	61656583	61656665	+
GWHAAZE00000007	exon	61656762	61656802	+
GWHAAZE00000007	exon	61657379	61657533	+
GWHAAZE00000007	exon	61657655	61657804	+
GWHAAZE00000007	exon	61657894	61657989	+
GWHAAZE00000007	exon	61658816	61658932	+
GWHAAZE00000007	exon	61659332	61659451	+
GWHAAZE00000007	exon	61659537	61659629	+
GWHAAZE00000007	exon	61659737	61659859	+
GWHAAZE00000007	exon	61660035	61660151	+
GWHAAZE00000007	exon	61660453	61660515	+
GWHAAZE00000007	exon	61660692	61660841	+
GWHAAZE00000007	CDS	61656078	61656479	+
GWHAAZE00000007	CDS	61656583	61656665	+
GWHAAZE00000007	CDS	61656762	61656802	+
GWHAAZE00000007	CDS	61657379	61657533	+
GWHAAZE00000007	CDS	61657655	61657804	+
GWHAAZE00000007	CDS	61657894	61657989	+
GWHAAZE00000007	CDS	61658816	61658932	+
GWHAAZE00000007	CDS	61659332	61659451	+
GWHAAZE00000007	CDS	61659537	61659629	+
GWHAAZE00000007	CDS	61659737	61659859	+
GWHAAZE00000007	CDS	61660035	61660151	+
GWHAAZE00000007	CDS	61660453	61660515	+
GWHAAZE00000007	CDS	61660692	61660841	+

Transcript Sequence
>GWHTAAZE025498 ATGGCGGCAGTGATGCATTTATGTGGAGCTAAAACTCCCAATCTTTCATTTCCACGGAACTTGCATGGTCAACCTTTCTGGCCAAGACAGCAGCTTGATTTTGTATCAAAAGTGGGTTCAGCTACCAGGTTATGCAGAACATTGGAGGGTTCATGCAGGGGAAGAGTTCTACGAGTAAGTTGTCAGCGAGGAAATACAGATGTTCTCCAATGGAGTAATACCAAAAATCAATTTTCTGAAGGAGTAGCTAACGAATTCACATGTGTGATGAAGTTTGGTGGATCATCAGTGGCCTCCGCTGTGAGGATGAGAGAAGTCGCTGAACTTATCCTCAGCTTCCCAGAAGAAAGACCTGTGATAGTTCTCTCTGCTATGGGCAAAACAACTAACAAGCTTTTACTGGCTGGAGAAAAGGCTGTAAGTTGTGGTGTTTCTAATGTTAGTCAGATTGACGAATTGACTTTTATTAAAGAATTGCATATCAGGACTGTAGATGAACTTGGAGTAGAGAGGTCCATCATTTCAAAACACCTAGAGGAATTAGAGCAACTTCTGAAGGGGATTGCTATGATGAAAGAGTTGACTCTACGCACAAAAGACTACTTAGTCTCATTTGGGGAGTGCCTATCCACGAGAATTTTTGCTGCATATTTGAATAAAATTGCTGTGAAAGCCCGCCAATATGACGCATTTGATATGGGTATCCTAACAACGGATGATTTCACAAATGCGGATATTTTGGAAGCAACTTATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGACTAGTAATCCTTCAATTCCAATTGTCACTGGTTTTCTTGGAAAGGGATGTAGAACTTGTGCAGTCACTACTTTAGGCAGGGGTGGTAGTGATTTGACAGCCACAACTATTGGTAAAGCATTGAGATTGCGAGAAATTCAGGTGTGGAAGGATGTTGATGGTGTTTTGACATGCGATCCTAATATATATCCACAAGCAGAACCTGTGCCATATCTAACCTTTGACGAGGCAGCTGAACTTGCATATTTTGGTGCTCAGGTCCTGCATCCACAGTCCATGAGGCCTGCTAGAGAAGGCGATATTCCTGTTAGGGTTAAAAACTCTTACAACCCTAATGCTCCAGGTACCCTCATCACTAGAGCAAGAGACATGAGTAAGGCAGTATTAACTAGCATTGTTTTGAAGCGGAATGTTACCATGTTGGATATTGTTAGCACTCGCATGCTTGGTCAATTTGGCTTCCTTGCTAAAGTGTTTTCAATATTTGAAGATTTGGGCATATCTGTGGATGTCGTAGCTACTAGTGAAGTGAGTATTTCCTTGACCTTGGATCCATCAAAGCTTTGGAGCAGAGAACTGATTCAGCAGGCAAGCGAACTTGATCATGTCGTGGATGAACTTGAGAAAATTGCAGTTGTGAATCTTCTCCAGCACAGGTCAATTATCTCTCTTATTGGGAATGTGCAGAGGTCATCTCTGATACTAGAAAAGGCTTTTCATGTTCTTCATAACAATGGAGTCAATGTTCAGATGATCTCTCAAGGTGCGTCTAAGGTCAATATTTCATTGATAGTAAATGACAGTGAAGCTGAACAATGTGTAAGGGCTCTCCACTCTACCTTCTTTGAGAACGATATCTCGGAACTAGTACAGGAGTATAAAATTGAAAATGGTCATGCTTCAACATGTGATAATGGACGTTGA

Network for GWHGAAZE025464

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	87	369	2.10E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00928	lysC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Glycine, serine and threonine metabolism	map00260
		Cysteine and methionine metabolism	map00270
		Lysine biosynthesis	map00300
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0008652	biological_process	cellular amino acid biosynthetic process
GO:0004072	molecular_function	aspartate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.502
	SRR3591706	second leaf	31.462
	SRR3591707	mature leaf	15.552
	SRR3591708	Shoot apex	36.940
	SRR3591709	Stem	48.516
	SRR3591710	White floral bud	30.339
	SRR3591711	White flower	30.466
	SRR3591712	Green floral bud	40.315
	SRR3591713	Yellow flower	28.447
SRP173429	SRR8316895	Juvenile bud stage	49.927
	SRR8316896	Juvenile bud stage	66.159
	SRR8316897	Juvenile bud stage	52.836
	SRR8316894	Third green stage	20.169
	SRR8316900	Third green stage	59.927
	SRR8316901	Third green stage	47.741
	SRR8316898	Complete white stage	8.016
	SRR8316899	Complete white stage	38.912
	SRR8316903	Complete white stage	11.676
	SRR8316902	Silver flowering stage	12.948
	SRR8316904	Silver flowering stage	18.295
	SRR8316905	Silver flowering stage	7.969
	SRR8316906	Gold flowering stage	38.473
	SRR8316907	Gold flowering stage	27.904
	SRR8316908	Gold flowering stage	40.715
SRP132670	SRR6706286	Control	20.254
	SRR6706287	Light intensity 50%	19.332
	SRR6706288	Light intensity 20%	20.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.610
	CNS0095593	Slightly white alabastrum(diploid) 2	47.321
	CNS0095594	Slightly white alabastrum(diploid) 3	42.467
	CNS0095595	Whole white alabastrum(diploid) 2	41.204
	CNS0095596	Whole white alabastrum(diploid) 3	30.150
	CNS0095597	Whole white alabastrum(diploid) 4	19.710
	CNS0095598	Silvery flower (diploied) 1	25.312
	CNS0095599	Silvery flower (diploied) 2	42.291
	CNS0095600	Silvery flower (diploied) 3	25.728
	CNS0095601	Golden flower (diploid) 1	30.344
	CNS0095602	Golden flower (diploid) 2	39.037
	CNS0095603	Golden flower (diploid) 3	37.523
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.401
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.730
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.120
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.141
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.987
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.038
	CNS0095610	Silvery flower (diploied) 1	14.538
	CNS0095611	Silvery flower (diploied) 2	14.458
	CNS0095612	Silvery flower (diploied) 3	13.998
	CNS0095613	Golden flower (tetraploid) 1	15.944
	CNS0095614	Golden flower (tetraploid) 2	23.992
	CNS0095615	Golden flower (tetraploid) 3	17.335
CRA001975	CRR073297	Stem 1	27.460
	CRR073298	Stem 2	25.478
	CRR073299	Stem 3	25.763
	CRR073300	Leaf 1	19.821
	CRR073301	Leaf 2	19.639
	CRR073302	Leaf 3	23.272
	CRR073303	Juvenile bud 1	24.310
	CRR073304	Juvenile bud 2	15.838
	CRR073305	Juvenile bud 3	27.448
	CRR073306	Third green 1	4.412
	CRR073307	Third green 2	4.343
	CRR073308	Third green 3	5.801
	CRR073309	Second white 1	9.651
	CRR073310	Second white 2	8.449
	CRR073311	Second white 3	10.467
	CRR073312	Silver flowering 1	18.477
	CRR073313	Silver flowering 2	19.067
	CRR073314	Silver flowering 3	18.557
	CRR073315	Gold flowering 1	12.349
	CRR073316	Gold flowering 2	17.972
	CRR073317	Gold flowering 3	11.012
	CRR073318	Tawny withering 1	26.234
	CRR073319	Tawny withering 2	30.594
	CRR073320	Tawny withering 3	36.210