Gene detail

Detail information of GWHGAAZE025530

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656472.1	0	PREDICTED: uncharacterized protein LOC104880667 isoform X1 [Vitis vinifera]
trEMBL	tr\|A0A061GVQ3\|A0A061GVQ3_THECC	0	Telomere-associated protein RIF1, putative {ECO:0000313\|EMBL:EOY31164.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	62629164	62641162	+
GWHAAZE00000007	mRNA	62629164	62641162	+
GWHAAZE00000007	exon	62629164	62629357	+
GWHAAZE00000007	exon	62629730	62629797	+
GWHAAZE00000007	exon	62631345	62631406	+
GWHAAZE00000007	exon	62631491	62631640	+
GWHAAZE00000007	exon	62633386	62633589	+
GWHAAZE00000007	exon	62634199	62634411	+
GWHAAZE00000007	exon	62635965	62636090	+
GWHAAZE00000007	exon	62637163	62638895	+
GWHAAZE00000007	exon	62639721	62639786	+
GWHAAZE00000007	exon	62639884	62639953	+
GWHAAZE00000007	exon	62640500	62641162	+
GWHAAZE00000007	CDS	62629164	62629357	+
GWHAAZE00000007	CDS	62629730	62629797	+
GWHAAZE00000007	CDS	62631345	62631406	+
GWHAAZE00000007	CDS	62631491	62631640	+
GWHAAZE00000007	CDS	62633386	62633589	+
GWHAAZE00000007	CDS	62634199	62634411	+
GWHAAZE00000007	CDS	62635965	62636090	+
GWHAAZE00000007	CDS	62637163	62638895	+
GWHAAZE00000007	CDS	62639721	62639786	+
GWHAAZE00000007	CDS	62639884	62639953	+
GWHAAZE00000007	CDS	62640500	62641162	+

Transcript Sequence
>GWHTAAZE025564 ATGCCGAATTTCAGGGACCAGCTCGAAGAAATCAAAACCCTTTTATCTTCAAACAAACCCTTCGCCTACTCAACACTCTTGCACCTCCAAGAACAAGCGACTACCGACCATTCTTTGGTTCAATCACTTGCTGATTCATCTCATCCTCTACTTTCCTCGATCCTCGTTGACATTAATGACGCCGACGAAGAAATTGCTGCGCAGGCTTTAAAGTGCTTGGGATTCATGACTTACCATCCAGCCATCCTTGTGAAAATTCGAGGGGACGATGCTACTATGATTCTGGATTCACTGGAAAAGGTCATTACGACCACTAAAATTAAGTCAGTTTGTAATTTAGGAGTGTGGTGCATATCAATCCAACAATTCAATGCATCATTATTGGCAGTGCATTTACACTCTTTGCTGAGGGCCGTCATTCATGCCCTAGACAATCCTATTGGTTCTCTTTCAACAACCTACGAAGCTATTCAGGCTGTGATGAAGTTAACAACCCAATTAAGTGAAATGATGAGAGACACATCGAATATATGGGCTCCTCCGATATACAGAAGGCTAGTCAGCACTGATAAAAGGGAGAAAGATATGGCAGAAAGATGTTTACTGAAGATATGGTCTACAGTTTGCCCTCCACCATTACTTCTCTCTAAGGTACTAGAACTACAGCATCTATTACAAGCAGTTGCCCTAGATATGAAGAAAAAATTGCTTCCTGCAATGAAGGAACTGGCAAGTGAAGGCATGAAGATTCGAGCTCTGCAAGCATGGGGATGGTATATTCGCTTGATAGGACCTTATGCCATCAAGAACAGGCATTTGGTCAATGAAATGCTAAAAATTCCCGAGCAAACATTTTCTGATTTAGACTCGCAAGTCCAGATTGCTACACAGGACTCATGTTGGGTGCAGGTCTCTGCTTTGAAATTTGATAACTTTGGAATCATGTATCAGTCATTTCTCTGGGCCATTCAAGTTAAGTTTGAAGGGCCTGAGTTCACCTGGGGCAACATGTTTAATGTTGCTTGGGAAGGTTTAATTGATGCTTTTATTCGGCCCCCAACTAAAGCTCTGGAGATAAATACAACAGCAGAGCAACATATTCGACATGAGAGATCATATGACGGAAACAATGGTGAAGTTCATGCAGATGGATTTTCGAAAAGACTTAGGCTCATAATGACCCCTCTAACCGGAATATTGTCAAGTAAATGTGATGTATCGGTTCGCTTGCATTGCCTCAATACATGGTGTTATTTGCTTCACAAACTTGACACCTCTGTCAACTGTCCATCAGTGATTAATACTGTTTGCCTACCTATCTTTGAAGTGGTTTTTGAAATTGGACCTCAAAATACGAACATCTGGTTTTGGAATTTCTGCATGGATATGCTTAATGATTTTGCTTTAGCGAGAAGTAAAAATGCATGTGATGACTTGAATAACCAGTTAAGCAGTCAATTATCAGCTAAATCACCAATTGTTGGACCTCCTGTATCTGGTGAATATTCATCCAAGCATTATCCTATTAAATGGTTACCTTGGGATGTTAGTCAGTTGGACTTCTTTATAAAGATGGTCCATATTCTCATCAGTCATGGTTCACTTGAGACTGTTGCACCCGAAATCAAAATTTTGGCATGTAATGCCGCCTTAAGGATATTTAGGGCTTTTTTAGAAGGCGTCCAAAATGTTTTGAAAAATTCCTCCACTACTTATACTGACCTAATGTTATGTTTGAGTGCAACTTTGACATGTGTGAAGAAAATTTGTGAAGATGCAAATTCGGAGGATGGTGGCATTAATGATTTGCGTCAAATATCGCTCCAATTTGTGGAAGCTATTACCAAGGAGTTGGAATCTTCTATACTGGGATCCCCTCTATACAAGGTGCCACTAGATCTCAAGTATATTGACAACTTGGGATCAGTTCACAGTTTTAGACATGCGAAAATAGTGGGTCCATCCTTTACAGATGATATGAATATGGTTCTGCCTATAGTTTATTTAACAATACTATATTTCAGTGTTGTTGCTAAATCAATAGTGAATGCACCGGAGGCAGAGTCCATATTAGAGAGGATGTTCAGATTTCTAAGATCTTCATTTTCTTCATATGATCCTCCAGAGATTCTTGTTGTTGTTACTGGTTTATTGTATAGACACTTGTCATTCAACTGCTTAAACATATGGTTTGTTATTGCGAATTGTCTAAAAGATTACATAGAGGGTGTTAAAGATCTCTCACTGTTGAAAACAGCGGTTCAAATGAATGGTTATCATTTAATATGCCATCTCTTGTGCTACCCCTTCAGTGTATTCTCCTTCCCTCATCAGATACAATTAACCTCCTTGAGGACTAGTAGTGGGTCCATGGAATTATCTCCTGTTTCGGCAGAATCACAAAGAAAACTTGAGCTTGAACATGTTATTGAAGTATGGAAATCTCTTTATGTTTCTGTTCTTCATGCTTCAAGATTTGAGTGTTCCTCCTCACAATGTTTTTCCGAGGATCTTTCTTCAATGTTAAACGGGTTCCTTGATGAAAGTACAAGCATGGCTGCATCCAGTACTGTGGTTGATGCAGGGGAGAATCATTGGGATCTTTATCTCATTTCTTTGTGTGGGAATGTTGTGATTTGTGTTCTGGAACAAATTTTGACATCGGAATTAAGTTATAACGGGAGCAAAAGTAAAGTTGGGAGCCATATAGGATCTAGTGGCCTCAATAATAGCTTGGGATTTGCGGCCAGGTTTATGAGGCTGGCACAGAGGAATGCGGCAATAGGCCCACCAACTGACCTTTTGATAACTTCAAGGTTATTCTCGACATTGGTGCACTTCGTGCATTCCCTTCACCTCAAGGAAGATATCATTTTATTTTTCGAGATTTTCTCAAGCTCATTGCTTCAGTGGCTGTCCCATGAAGTACAAGACAAAAACACCAACCATCAACTCCAACTGTTATGGAACGAAATCCTCAATAGTTTGCAGATCAGTTCTCCACCAATAAATTTTGATTCGTCCTCGCTTAATCTCCAATCAACCCTACTCGAGAAAACCCTTGACCACCCACATCTCTCCATATCCGAGCCCACCATCACGTTTTGGAACTCTACATATGGCGAGCAAATCAATCTAGACTACCCTCAAACTTTACTTCCTGTTCTAGACAAACTTTCAAGAACCGGAAAAATAAAACTCGGCAGGAGAAAAATAGCGCCAAATAGTGAAAAGGTTGTTCAAAGAGTAGATGACTTGAGTTCTACACAGAGATACAAGGTGACTGCTACGCTGAATAGTAGGAGCTCAAAAAGAGTGGAACTAGTGAAAAGGAAGAGGTCAGAAGAACTAACAGAACATCAAAAGGAAGTGAGAAGAGCACAGCAAGGAAAAATGAGGGATTGTGATGGGCGGGGTCCTGGGGTCCGCACATACACGAGTGTCGATTTCTCTCAAGGGAATGAAGACGAGTCACAGGAGAGCCAGGACATTCCAAATGCAGATGCCATCTTGGAGAGGTTGAAAAGGGATGGTGCTAAATTAGCCTAA

Network for GWHGAAZE025530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12231.9	Rif1_N	32	298	1.20E-27

Protein Sequence

>GWHPAAZE025548
MPNFRDQLEEIKTLLSSNKPFAYSTLLHLQEQATTDHSLVQSLADSSHPLLSSILVDINDADEEIAAQALKCLGFMTYHPAILVKIRGDDATMILDSLEKVITTTKIKSVCNLGVWCISIQQFNASLLAVHLHSLLRAVIHALDNPIGSLSTTYEAIQAVMKLTTQLSEMMRDTSNIWAPPIYRRLVSTDKREKDMAERCLLKIWSTVCPPPLLLSKVLELQHLLQAVALDMKKKLLPAMKELASEGMKIRALQAWGWYIRLIGPYAIKNRHLVNEMLKIPEQTFSDLDSQVQIATQDSCWVQVSALKFDNFGIMYQSFLWAIQVKFEGPEFTWGNMFNVAWEGLIDAFIRPPTKALEINTTAEQHIRHERSYDGNNGEVHADGFSKRLRLIMTPLTGILSSKCDVSVRLHCLNTWCYLLHKLDTSVNCPSVINTVCLPIFEVVFEIGPQNTNIWFWNFCMDMLNDFALARSKNACDDLNNQLSSQLSAKSPIVGPPVSGEYSSKHYPIKWLPWDVSQLDFFIKMVHILISHGSLETVAPEIKILACNAALRIFRAFLEGVQNVLKNSSTTYTDLMLCLSATLTCVKKICEDANSEDGGINDLRQISLQFVEAITKELESSILGSPLYKVPLDLKYIDNLGSVHSFRHAKIVGPSFTDDMNMVLPIVYLTILYFSVVAKSIVNAPEAESILERMFRFLRSSFSSYDPPEILVVVTGLLYRHLSFNCLNIWFVIANCLKDYIEGVKDLSLLKTAVQMNGYHLICHLLCYPFSVFSFPHQIQLTSLRTSSGSMELSPVSAESQRKLELEHVIEVWKSLYVSVLHASRFECSSSQCFSEDLSSMLNGFLDESTSMAASSTVVDAGENHWDLYLISLCGNVVICVLEQILTSELSYNGSKSKVGSHIGSSGLNNSLGFAARFMRLAQRNAAIGPPTDLLITSRLFSTLVHFVHSLHLKEDIILFFEIFSSSLLQWLSHEVQDKNTNHQLQLLWNEILNSLQISSPPINFDSSSLNLQSTLLEKTLDHPHLSISEPTITFWNSTYGEQINLDYPQTLLPVLDKLSRTGKIKLGRRKIAPNSEKVVQRVDDLSSTQRYKVTATLNSRSSKRVELVKRKRSEELTEHQKEVRRAQQGKMRDCDGRGPGVRTYTSVDFSQGNEDESQESQDIPNADAILERLKRDGAKLA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11138	RIF1	Signaling pathways regulating pluripotency of stem cells	map04550

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.967
	SRR3591706	second leaf	1.180
	SRR3591707	mature leaf	0.754
	SRR3591708	Shoot apex	4.269
	SRR3591709	Stem	1.362
	SRR3591710	White floral bud	1.538
	SRR3591711	White flower	1.331
	SRR3591712	Green floral bud	2.674
	SRR3591713	Yellow flower	0.475
SRP173429	SRR8316895	Juvenile bud stage	2.036
	SRR8316896	Juvenile bud stage	2.951
	SRR8316897	Juvenile bud stage	1.155
	SRR8316894	Third green stage	0.999
	SRR8316900	Third green stage	1.479
	SRR8316901	Third green stage	2.316
	SRR8316898	Complete white stage	0.174
	SRR8316899	Complete white stage	0.912
	SRR8316903	Complete white stage	0.348
	SRR8316902	Silver flowering stage	0.182
	SRR8316904	Silver flowering stage	0.357
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.417
	SRR8316907	Gold flowering stage	0.316
	SRR8316908	Gold flowering stage	0.404
SRP132670	SRR6706286	Control	0.991
	SRR6706287	Light intensity 50%	0.934
	SRR6706288	Light intensity 20%	0.882
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.708
	CNS0095593	Slightly white alabastrum(diploid) 2	1.257
	CNS0095594	Slightly white alabastrum(diploid) 3	1.522
	CNS0095595	Whole white alabastrum(diploid) 2	0.693
	CNS0095596	Whole white alabastrum(diploid) 3	0.524
	CNS0095597	Whole white alabastrum(diploid) 4	0.604
	CNS0095598	Silvery flower (diploied) 1	1.185
	CNS0095599	Silvery flower (diploied) 2	1.231
	CNS0095600	Silvery flower (diploied) 3	1.047
	CNS0095601	Golden flower (diploid) 1	1.112
	CNS0095602	Golden flower (diploid) 2	0.812
	CNS0095603	Golden flower (diploid) 3	0.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.841
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.008
	CNS0095610	Silvery flower (diploied) 1	0.566
	CNS0095611	Silvery flower (diploied) 2	0.912
	CNS0095612	Silvery flower (diploied) 3	0.299
	CNS0095613	Golden flower (tetraploid) 1	0.124
	CNS0095614	Golden flower (tetraploid) 2	0.313
	CNS0095615	Golden flower (tetraploid) 3	0.173
CRA001975	CRR073297	Stem 1	1.737
	CRR073298	Stem 2	1.792
	CRR073299	Stem 3	1.158
	CRR073300	Leaf 1	1.124
	CRR073301	Leaf 2	1.116
	CRR073302	Leaf 3	1.002
	CRR073303	Juvenile bud 1	1.037
	CRR073304	Juvenile bud 2	0.560
	CRR073305	Juvenile bud 3	0.788
	CRR073306	Third green 1	0.042
	CRR073307	Third green 2	0.034
	CRR073308	Third green 3	0.245
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.318
	CRR073311	Second white 3	0.109
	CRR073312	Silver flowering 1	0.057
	CRR073313	Silver flowering 2	0.098
	CRR073314	Silver flowering 3	0.066
	CRR073315	Gold flowering 1	0.588
	CRR073316	Gold flowering 2	0.925
	CRR073317	Gold flowering 3	0.280
	CRR073318	Tawny withering 1	0.477
	CRR073319	Tawny withering 2	1.011
	CRR073320	Tawny withering 3	1.501