Gene detail

Detail information of GWHGAAZE025629

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656334.1	0	PREDICTED: uncharacterized protein LOC100254414 [Vitis vinifera]
COG	YP_005321927.1	3E-14	peptidase c14 caspase catalytic subunit p20
Swissprot	tr\|P42158\|KC1D_ARATH	9E-38	Casein kinase I isoform delta-like
trEMBL	tr\|F6HH26\|F6HH26_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51522.1}
TAIR10	AT3G03940.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	64874835	64883661	-
GWHAAZE00000007	mRNA	64874835	64883661	-
GWHAAZE00000007	exon	64874835	64875095	-
GWHAAZE00000007	exon	64876151	64876308	-
GWHAAZE00000007	exon	64876977	64877067	-
GWHAAZE00000007	exon	64877171	64877345	-
GWHAAZE00000007	exon	64877695	64877825	-
GWHAAZE00000007	exon	64878241	64878459	-
GWHAAZE00000007	exon	64878937	64879066	-
GWHAAZE00000007	exon	64879637	64879703	-
GWHAAZE00000007	exon	64879847	64879941	-
GWHAAZE00000007	exon	64880063	64880134	-
GWHAAZE00000007	exon	64880868	64880941	-
GWHAAZE00000007	exon	64881206	64881331	-
GWHAAZE00000007	exon	64883275	64883661	-
GWHAAZE00000007	CDS	64883275	64883661	-
GWHAAZE00000007	CDS	64881206	64881331	-
GWHAAZE00000007	CDS	64880868	64880941	-
GWHAAZE00000007	CDS	64880063	64880134	-
GWHAAZE00000007	CDS	64879847	64879941	-
GWHAAZE00000007	CDS	64879637	64879703	-
GWHAAZE00000007	CDS	64878937	64879066	-
GWHAAZE00000007	CDS	64878241	64878459	-
GWHAAZE00000007	CDS	64877695	64877825	-
GWHAAZE00000007	CDS	64877171	64877345	-
GWHAAZE00000007	CDS	64876977	64877067	-
GWHAAZE00000007	CDS	64876151	64876308	-
GWHAAZE00000007	CDS	64874835	64875095	-

Transcript Sequence
>GWHTAAZE025663 ATGCCCGATTTGAGAAGTGGAGCCCGCCAAACGAAAAAAGTCAACAATGTTGAGGAAAATCCCGCCATTTTAGCTCCAACTTCTCGACGGGGGACCAGAAGAGGCAATGCCCCAAAAGCTCTGGTCGTAAAATCGCCTCCGGTTAACAATCCGGCAACCCCGGCGTCTCTTTATCCAATGCCAAGGGGGGCCGGTAGAGGTAGAGGGTGTAGAGTAAACCAAGATAAGAATGTGGAGCTTTTTGGTGCTGGGCTTGGTGGTCGAGGTCGTGCTTGTTTGGATGTAGGAGTAAAGGCTGCTATTCCAGTGGAATTGGTGGCCGAGAAAACTGCGGAAAAGTTGGCTGCCGTTGAGGAGGAAGGAAATACGACTCCACTTCCTGAAAGGGTGCAGCTAGGTAATTCCCCTGTGTACAAGTTAGACAGGAAGCTGGGTAAAGGGGGCTTTGGTCAAGTTTATGTTGGAAGGAGAGTGACCGGTGGTTCAGGTATCACGGGCCCCAATGCAGTTGAGCTTGCTTTGAAGTTTGAACATCGAAATGGTAAGGGATGTAGCTATGGCCCACCTTATGAATGGCAAGTTTATAGGCTGTCAGAAGAGATGGTTGCTTGTATAGCAGTGGAGGCAATATCAATACTTGAGCAGCTTCACTTTAGAGGTTTTGTGCATGGAGATGTAAAGCCAGAAAACCTTTTGCTTGGTCAGCCAGGAACACCCAATGAGAAGAAATTGTATTTAGTCGATCTTGGTTTAGCTTCTAAATGGAGGGATGCATCTTCTGGTCGTCATGTTGATTATGATCAAAAGCCCGACGTTTTCAGGGGTACGGTACGTTATGCAAGTGTGCATGCTCATTTGGGAAGGACAGGAAGTAGGAGGGACGACCTCGAGTCACTAGCTTATACTTTAATATTCCTCCTCAAAGGAAAGCTTCCTTGGCAAGGCTTCATTGGAGAGAATAAAGGATTTCTTGTTTGTAAAAAGAAGATGGCGACTTCCGCTGAGATGCTTTGTTGCTTATGCCCTCCCCCTTTTCAACGTTTCCTCGAGATGGTGACCGATATGAAATTTGATGAAGAACCCAATTATTCAAAACTCATCTCCCTTTTTGATAACAGCATAGTTTCTTCAGCATCATTGCGTCCTCTCATAATAGACGGCGCCTTAAAGGTCGGGCAAAAGAGGGGAAGGATGCTTGTTGAGTTGGAAGATGGTGGGCAGCCCAGGAAGAAAGTAAGACTTGGTACACCAGCCACTCAGTGGATCTCTGTGTATAATTCAAGGACATCAATGAAGCAGAGATATCACTACAACGTATCGGATACTAGACTTTCCCAACACGTGGAGAAAGGGAGGGAAGATGGTCTCTACATTAGCTCCGTTGCTTCATCAACAAATTTATGGGCAGTTGTTATGGATGCAGGGACAGGGTTTGTATCCCAGGTTTATGAACTATCGCCCATTTTCTTACACAAGGAATGGATAATGGAGCAGTGGGATAAGAACTATTACATCACTTCTCTTGCTGGTGCATCTAATGGCAATGCTCTTGTGGTAATGTCCAAGGGGACGAGTTTTAGCCAGCAGTCATATAAAGTAAGCGAAGTATTTCCTTTCAAATGGATCAACAAGAAGTGGAAAGAAGGCTTTTCGGTTACCTCCATGACCACTGCCGGTAACAGATGGGGGATAGTCATGTCCCGTGATGCGGGTTATTCTACTCAGGTGGTTGAACTCGATTTTCTGTATCCTAGTGAAGGGATTCATAGGAGATGGGAAAACGGATATCGAATTACGTCAGCTGCTGCAACAGCAGATCAGGCTGCGTTTATACTAAGTGCCAATAAGAGGAAATCACAAGATGTCACCCAAGAAACTTTGCGTACTTCGGCCTTTCCTACTAACCATGTTAAGGTACCTTTCAAGTTTATTCTGTTTTATGTTTTCTTGATGTTGAACCTAACCTTGTTTTCTCGAATGAAATAG

Network for GWHGAAZE025629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	197	328	1.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.867
	SRR3591706	second leaf	22.395
	SRR3591707	mature leaf	25.566
	SRR3591708	Shoot apex	28.028
	SRR3591709	Stem	48.979
	SRR3591710	White floral bud	62.983
	SRR3591711	White flower	60.205
	SRR3591712	Green floral bud	41.121
	SRR3591713	Yellow flower	66.649
SRP173429	SRR8316895	Juvenile bud stage	26.389
	SRR8316896	Juvenile bud stage	35.087
	SRR8316897	Juvenile bud stage	16.408
	SRR8316894	Third green stage	17.157
	SRR8316900	Third green stage	51.267
	SRR8316901	Third green stage	51.091
	SRR8316898	Complete white stage	37.679
	SRR8316899	Complete white stage	63.452
	SRR8316903	Complete white stage	62.855
	SRR8316902	Silver flowering stage	36.282
	SRR8316904	Silver flowering stage	52.482
	SRR8316905	Silver flowering stage	25.351
	SRR8316906	Gold flowering stage	90.278
	SRR8316907	Gold flowering stage	85.854
	SRR8316908	Gold flowering stage	83.947
SRP132670	SRR6706286	Control	44.765
	SRR6706287	Light intensity 50%	48.914
	SRR6706288	Light intensity 20%	48.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.755
	CNS0095593	Slightly white alabastrum(diploid) 2	24.088
	CNS0095594	Slightly white alabastrum(diploid) 3	26.883
	CNS0095595	Whole white alabastrum(diploid) 2	25.146
	CNS0095596	Whole white alabastrum(diploid) 3	28.116
	CNS0095597	Whole white alabastrum(diploid) 4	26.580
	CNS0095598	Silvery flower (diploied) 1	34.269
	CNS0095599	Silvery flower (diploied) 2	33.274
	CNS0095600	Silvery flower (diploied) 3	68.978
	CNS0095601	Golden flower (diploid) 1	26.997
	CNS0095602	Golden flower (diploid) 2	58.854
	CNS0095603	Golden flower (diploid) 3	58.901
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.504
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.768
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.031
	CNS0095610	Silvery flower (diploied) 1	73.846
	CNS0095611	Silvery flower (diploied) 2	66.440
	CNS0095612	Silvery flower (diploied) 3	93.121
	CNS0095613	Golden flower (tetraploid) 1	45.691
	CNS0095614	Golden flower (tetraploid) 2	60.102
	CNS0095615	Golden flower (tetraploid) 3	90.649
CRA001975	CRR073297	Stem 1	45.190
	CRR073298	Stem 2	42.635
	CRR073299	Stem 3	33.101
	CRR073300	Leaf 1	57.094
	CRR073301	Leaf 2	48.402
	CRR073302	Leaf 3	36.346
	CRR073303	Juvenile bud 1	39.037
	CRR073304	Juvenile bud 2	36.235
	CRR073305	Juvenile bud 3	43.673
	CRR073306	Third green 1	59.346
	CRR073307	Third green 2	46.625
	CRR073308	Third green 3	53.115
	CRR073309	Second white 1	51.189
	CRR073310	Second white 2	55.759
	CRR073311	Second white 3	60.290
	CRR073312	Silver flowering 1	54.763
	CRR073313	Silver flowering 2	48.755
	CRR073314	Silver flowering 3	45.706
	CRR073315	Gold flowering 1	24.160
	CRR073316	Gold flowering 2	43.487
	CRR073317	Gold flowering 3	30.893
	CRR073318	Tawny withering 1	32.166
	CRR073319	Tawny withering 2	26.140
	CRR073320	Tawny withering 3	28.572