Gene detail

Detail information of GWHGAAZE025656

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010089223.1	0	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Morus notabilis]
COG	YP_006370055.1	2E-90	peroxisomal bifunctional enzyme
Swissprot	tr\|Q9ZPI6\|AIM1_ARATH	0	3-hydroxyacyl-CoA dehydrogenase
trEMBL	tr\|W9RPA6\|W9RPA6_9ROSA	0	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 {ECO:0000313\|EMBL:EXB84763.1}
TAIR10	AT4G29010.1	0	Enoyl-CoA hydratase/isomerase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65406607	65419723	+
GWHAAZE00000007	mRNA	65406607	65419723	+
GWHAAZE00000007	exon	65406607	65406715	+
GWHAAZE00000007	exon	65406841	65406896	+
GWHAAZE00000007	exon	65407685	65407987	+
GWHAAZE00000007	exon	65408575	65408666	+
GWHAAZE00000007	exon	65410347	65410479	+
GWHAAZE00000007	exon	65410639	65410725	+
GWHAAZE00000007	exon	65412384	65412558	+
GWHAAZE00000007	exon	65412756	65412877	+
GWHAAZE00000007	exon	65413696	65413859	+
GWHAAZE00000007	exon	65414346	65414600	+
GWHAAZE00000007	exon	65416160	65416403	+
GWHAAZE00000007	exon	65417601	65417749	+
GWHAAZE00000007	exon	65418483	65418542	+
GWHAAZE00000007	exon	65418764	65418902	+
GWHAAZE00000007	exon	65419574	65419723	+
GWHAAZE00000007	CDS	65406607	65406715	+
GWHAAZE00000007	CDS	65406841	65406896	+
GWHAAZE00000007	CDS	65407685	65407987	+
GWHAAZE00000007	CDS	65408575	65408666	+
GWHAAZE00000007	CDS	65410347	65410479	+
GWHAAZE00000007	CDS	65410639	65410725	+
GWHAAZE00000007	CDS	65412384	65412558	+
GWHAAZE00000007	CDS	65412756	65412877	+
GWHAAZE00000007	CDS	65413696	65413859	+
GWHAAZE00000007	CDS	65414346	65414600	+
GWHAAZE00000007	CDS	65416160	65416403	+
GWHAAZE00000007	CDS	65417601	65417749	+
GWHAAZE00000007	CDS	65418483	65418542	+
GWHAAZE00000007	CDS	65418764	65418902	+
GWHAAZE00000007	CDS	65419574	65419618	+
GWHAAZE00000007	three_prime_UTR	65419619	65419723	+

Transcript Sequence
>GWHTAAZE025690 ATGCATAATTTCCCGCCAAATCTATGCAGGGATGCCATGCACGCATTGCCGCCAAGAACACAACTTGGTTTACCCGAATTAACCCTTGGAGTTATTCCTGGCTTTGGAGGAACACAACGACTTCCAAGGCTTGTAGGATTGTCAAAGGCTGTTGAAATGATGCTGCAATCAAAATCAATAATGTCTGAAGAAGGAAAGAAACTAGGTCTCATAGATGCTGTTGTGTCTTCTGAAGAGCTGTTAAAAGTAGCACGGCAATGGGCATTAGACATAGTGGAGGGACGCAAACCGTGGATGAGTTCCCTTCATCGGACGGACAAGATTGGTTCGCTCTCCGAAGCTCATAAGATTCTGAAACTTGCTAGACAACAAGCCAAACTGATTGCTCCAAACATGCCCCAGCATCAGGCATGCCTTGACGTGATCGAGGAAGGCATCGTCCATGGAGGATATAATGGGGTCTTGAAGAAGTTTGTCCCTGGTTCTCTTCTTGCAAACAACCCACATCATAAAACTGCAACGTGGGATGTAATCTCTATGCCATACCAAACCATGCCAAGGTGGGGAACAAATTTGAGAAAAATGCCTTTTGTGCCCTATGCAATGAAGATGCTCTTGCTATTGTCTTCCCTATTTAAGGAAATTGGTATTTCTGGCCTTACTGTGTCGTTCGTTGTGGTCACAGATTTTGCTGAGGCGAAAGTGTTTAAGGACCTTGTCATATCAGAAACTTCAAAAGGACTTGTTCATGCCTTTTTTGCCCAACGTGCTACATCAAAGGTACCTAATGTTACTGACCTAGGGCTCAAACCAAGGCCTGTAAAGAAAGTTGCTGTAATTGGTGGAGGCCTAATGGGTTCTGGCATAGCTACTGCTCTTATCCTGAGCAATACATTTGTCGTTCTCAAGGAAATTAACTCTGATTATCTTCAAAAGGGGATTAAAATGATTGAAGGAAATGTCCAAGGCTTGGTAGCAAGAAAAAAGTTGGCACAGGATAAAGCGGATAAAGCTCTTACAATGCTGAAAGGTGTATTAGATTACTCAGAATTCAAAGATGTTGATATGGTTATTGAGGCTGTCATTGAAAGTATTCCACTAAAGCAAAAAATATTTAGTGAAATTGAGAAGGTCTGCCCTCAGCATTGCATTTTGGCAACCAACACATCCACTATTGACCTCAATGTAATTGGAGAAAAAATAGTATCTCAAGATCGGGTTGTGGGGGCACATTTTTTCAGTCCTGCACATGTGATGCCTCTCCTCGAGATCATACGGACAGAGAAGACTTCTGCACAAGTAATTCTTGATCTAATGACAGTAGGGAAAGCCATAAAGAAAGTTCCTGTTGTGGTCGGAAACTGTACTGGATTTGCAGTCAATCGGACCTTCTTTCCATACACCCAGGGTGCACATATTCTAATCCATTTAGGAGTGGACGTGTTCAGAATTGACAGGGTGATCAGCAGTTTTGGCCTCCCTATGGGCCCACTCCAGCTTCAGGATTTAGCCGGATATGGGGTTGCCGTTGCTGTAGGGAAAATTTTTGCTACTGCTTTTCCAGACCGCACATTCCGTTCTCCCTTGGTTGAACTTCTGATAAAAAATGGGCGAAATGGTAAAAACAATGGAAGAGGATACTACATTTACGAGAAGGGAAGCAAGCCAAAACCCGATCCTTCGGTGCTACCAATTATAGAGGAGTCTAGAAGGCTTGCCAACCTTATGCCCAAAGGGAAGCCTATATCAATCACTGACCAAGAAATTGCGGAGATGATACTTTTTCCAGTGGTGAACGAGGCATGCCGTGTTCTGGACGAAGGAGTGGTAGTTCGAGCATCGGATCTTGATGTTGCATCTGTTCTTGGAATGAGCTTCCCTAAGTACCGGGTATTCAGGCCTGCTAGATCAGTTGGCCTATCCCCGGGTACAGACCCTTCAATTCGCATTGGCGGTATTGTTTTTTGGGCGGACATGGTTGGAGTGAAGCATGTATATACAAGTCTGAAGAAGTGGTCTGAACTATATGGCAACTTCTATAAACCATCAAAGTTTTTGGAAGAAAGAGCTACTAAAGGCATTCCATTGAGCGCACCTTCTTCAACAACTCCAGCCTCAAGGTCACGGCTTTAGGCATTTTATGTATGGCGCCGGTCTACTTCTCAAGGAAGTTAATACACGTGGAAAATAAAGGTCGTGTTATTTGCTGCCCAACTTAGTGCAAGTGGTTTTTTTCTG

Network for GWHGAAZE025656

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00378.21	ECH_1	21	95	4.60E-15
PF02737.19	3HCDH_N	276	454	1.70E-57
PF00725.23	3HCDH	457	550	4.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10527	MFP2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006631	biological_process	fatty acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003857	molecular_function	3-hydroxyacyl-CoA dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.993
	SRR3591706	second leaf	21.416
	SRR3591707	mature leaf	35.488
	SRR3591708	Shoot apex	25.426
	SRR3591709	Stem	46.436
	SRR3591710	White floral bud	156.288
	SRR3591711	White flower	140.195
	SRR3591712	Green floral bud	159.489
	SRR3591713	Yellow flower	201.603
SRP173429	SRR8316895	Juvenile bud stage	57.916
	SRR8316896	Juvenile bud stage	82.799
	SRR8316897	Juvenile bud stage	46.943
	SRR8316894	Third green stage	46.192
	SRR8316900	Third green stage	219.193
	SRR8316901	Third green stage	205.824
	SRR8316898	Complete white stage	163.739
	SRR8316899	Complete white stage	422.394
	SRR8316903	Complete white stage	236.413
	SRR8316902	Silver flowering stage	110.584
	SRR8316904	Silver flowering stage	141.251
	SRR8316905	Silver flowering stage	77.937
	SRR8316906	Gold flowering stage	297.860
	SRR8316907	Gold flowering stage	233.791
	SRR8316908	Gold flowering stage	272.952
SRP132670	SRR6706286	Control	280.425
	SRR6706287	Light intensity 50%	254.565
	SRR6706288	Light intensity 20%	280.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	76.299
	CNS0095593	Slightly white alabastrum(diploid) 2	90.138
	CNS0095594	Slightly white alabastrum(diploid) 3	64.048
	CNS0095595	Whole white alabastrum(diploid) 2	97.737
	CNS0095596	Whole white alabastrum(diploid) 3	92.758
	CNS0095597	Whole white alabastrum(diploid) 4	108.896
	CNS0095598	Silvery flower (diploied) 1	128.246
	CNS0095599	Silvery flower (diploied) 2	138.278
	CNS0095600	Silvery flower (diploied) 3	362.150
	CNS0095601	Golden flower (diploid) 1	168.540
	CNS0095602	Golden flower (diploid) 2	297.085
	CNS0095603	Golden flower (diploid) 3	292.461
	CNS0095604	Slightly white alabastrum(tetraploid) 1	126.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	212.938
	CNS0095607	Whole white alabastrum(tetraploid) 1	72.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	104.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	294.965
	CNS0095610	Silvery flower (diploied) 1	405.127
	CNS0095611	Silvery flower (diploied) 2	491.907
	CNS0095612	Silvery flower (diploied) 3	277.446
	CNS0095613	Golden flower (tetraploid) 1	228.038
	CNS0095614	Golden flower (tetraploid) 2	259.269
	CNS0095615	Golden flower (tetraploid) 3	226.304
CRA001975	CRR073297	Stem 1	84.090
	CRR073298	Stem 2	81.870
	CRR073299	Stem 3	70.002
	CRR073300	Leaf 1	198.180
	CRR073301	Leaf 2	166.701
	CRR073302	Leaf 3	175.811
	CRR073303	Juvenile bud 1	307.904
	CRR073304	Juvenile bud 2	301.722
	CRR073305	Juvenile bud 3	351.005
	CRR073306	Third green 1	156.472
	CRR073307	Third green 2	112.280
	CRR073308	Third green 3	113.308
	CRR073309	Second white 1	207.487
	CRR073310	Second white 2	115.238
	CRR073311	Second white 3	121.072
	CRR073312	Silver flowering 1	105.616
	CRR073313	Silver flowering 2	103.143
	CRR073314	Silver flowering 3	111.594
	CRR073315	Gold flowering 1	23.953
	CRR073316	Gold flowering 2	34.059
	CRR073317	Gold flowering 3	29.630
	CRR073318	Tawny withering 1	41.620
	CRR073319	Tawny withering 2	40.364
	CRR073320	Tawny withering 3	29.530