Gene detail

Detail information of GWHGAAZE025662

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU32942.1	1.0418E-149	hypothetical protein MIMGU_mgv1a013795mg [Erythranthe guttata]
COG	YP_003319433.1	2E-13	small GTP-binding protein
Swissprot	tr\|O82480\|RAC7_ARATH	1E-137	Rac-like GTP-binding protein ARAC7
trEMBL	tr\|A0A022QWD1\|A0A022QWD1_ERYGU	4E-150	Uncharacterized protein {ECO:0000313\|EMBL:EYU32942.1}
TAIR10	AT4G28950.1	2E-103	RHO-related protein from plants 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65564258	65567170	-
GWHAAZE00000007	mRNA	65564258	65567170	-
GWHAAZE00000007	exon	65564258	65564291	-
GWHAAZE00000007	exon	65564746	65564852	-
GWHAAZE00000007	exon	65565327	65565392	-
GWHAAZE00000007	exon	65565661	65565725	-
GWHAAZE00000007	exon	65565885	65565948	-
GWHAAZE00000007	exon	65566207	65566316	-
GWHAAZE00000007	exon	65566439	65566526	-
GWHAAZE00000007	exon	65567066	65567170	-
GWHAAZE00000007	CDS	65567066	65567170	-
GWHAAZE00000007	CDS	65566439	65566526	-
GWHAAZE00000007	CDS	65566207	65566316	-
GWHAAZE00000007	CDS	65565885	65565948	-
GWHAAZE00000007	CDS	65565661	65565725	-
GWHAAZE00000007	CDS	65565327	65565392	-
GWHAAZE00000007	CDS	65564746	65564852	-
GWHAAZE00000007	CDS	65564258	65564291	-

Transcript Sequence
>GWHTAAZE025696 ATGATGATGAGTGCTTCAAAGTTCATAAAATGTGTGACTGTTGGAGATGGAGCTGTGGGCAAGACTTGTATGCTCATTTGTTATACCAGTAACAAGTTCCCCACTGATTATATTCCAACAGTGTTTGATAATTTCAGTGCTAATGTGGCTGTGGATGGGAACATTGTTAACTTGGGACTATGGGACACTGCAGGTCAGGAAGATTATAGCAGGTTGAGGCCACTAAGTTACAGAGGTGCAGACATATTTGTGTTAGCTTTCTCTTTAATCAGTAGGGCCAGTTATGAAAATGTCCTCAAGAAGTGGATGCCGGAACTTCGCCGATTCGCACCCAATGTTCCAATTGTTCTTGTTGGAACAAAGTTAGATCTTCGTGAAGACAGAGGATATCTAGCTGATCATATGGGATCTAACATCATAACACCTGCTCAAGGCGAGGAGCTGAGAAAACAAATTGGTGCGGCAGCTTACATAGAATGCAGCTCCAAGACCCAACAGAATGTCAAAGCTGTTTTTGATACTGCAATCAAGGTTGTACTTCAACCTCCAAGGAGGAAGGAAATGGCAAGGAAGAAAAGGCACCGAAGCTCTGGTTGCTCGATTGTCAGGGGTATTGTTTGTGGAGGTTGCGTTGTGTAG

Network for GWHGAAZE025662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	10	180	3.40E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.949
	SRR3591706	second leaf	2.576
	SRR3591707	mature leaf	0.632
	SRR3591708	Shoot apex	32.874
	SRR3591709	Stem	9.509
	SRR3591710	White floral bud	3.224
	SRR3591711	White flower	2.183
	SRR3591712	Green floral bud	4.124
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	12.753
	SRR8316896	Juvenile bud stage	8.567
	SRR8316897	Juvenile bud stage	5.494
	SRR8316894	Third green stage	4.313
	SRR8316900	Third green stage	6.673
	SRR8316901	Third green stage	5.403
	SRR8316898	Complete white stage	0.135
	SRR8316899	Complete white stage	3.489
	SRR8316903	Complete white stage	0.676
	SRR8316902	Silver flowering stage	0.417
	SRR8316904	Silver flowering stage	0.113
	SRR8316905	Silver flowering stage	0.107
	SRR8316906	Gold flowering stage	0.140
	SRR8316907	Gold flowering stage	0.766
	SRR8316908	Gold flowering stage	0.815
SRP132670	SRR6706286	Control	3.762
	SRR6706287	Light intensity 50%	4.716
	SRR6706288	Light intensity 20%	5.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.309
	CNS0095593	Slightly white alabastrum(diploid) 2	10.728
	CNS0095594	Slightly white alabastrum(diploid) 3	8.498
	CNS0095595	Whole white alabastrum(diploid) 2	6.574
	CNS0095596	Whole white alabastrum(diploid) 3	4.548
	CNS0095597	Whole white alabastrum(diploid) 4	2.820
	CNS0095598	Silvery flower (diploied) 1	7.910
	CNS0095599	Silvery flower (diploied) 2	8.398
	CNS0095600	Silvery flower (diploied) 3	3.230
	CNS0095601	Golden flower (diploid) 1	5.833
	CNS0095602	Golden flower (diploid) 2	2.736
	CNS0095603	Golden flower (diploid) 3	3.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.347
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.242
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.250
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.591
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.317
	CNS0095610	Silvery flower (diploied) 1	0.473
	CNS0095611	Silvery flower (diploied) 2	1.364
	CNS0095612	Silvery flower (diploied) 3	1.402
	CNS0095613	Golden flower (tetraploid) 1	0.136
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	10.743
	CRR073298	Stem 2	12.791
	CRR073299	Stem 3	14.718
	CRR073300	Leaf 1	4.118
	CRR073301	Leaf 2	4.891
	CRR073302	Leaf 3	9.133
	CRR073303	Juvenile bud 1	2.234
	CRR073304	Juvenile bud 2	1.074
	CRR073305	Juvenile bud 3	1.029
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.096
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.661
	CRR073316	Gold flowering 2	0.359
	CRR073317	Gold flowering 3	1.833
	CRR073318	Tawny withering 1	34.817
	CRR073319	Tawny withering 2	26.291
	CRR073320	Tawny withering 3	40.098