Detail information of GWHGAAZE025738


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008459153.11.5976E-105PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Cucumis melo]
Swissprottr|Q9SZE4|VP322_ARATH8E-96Vacuolar protein sorting-associated protein 32 homolog 2
trEMBLtr|A0A0A0LHT5|A0A0A0LHT5_CUCSA2E-105Uncharacterized protein {ECO:0000313|EMBL:KGN60554.1}
TAIR10AT2G19830.14E-52SNF7 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6704146067044480-
GWHAAZE00000007mRNA6704146067044480-
GWHAAZE00000007exon6704146067041657-
GWHAAZE00000007exon6704330967043423-
GWHAAZE00000007exon6704401067044101-
GWHAAZE00000007exon6704419967044284-
GWHAAZE00000007exon6704439067044480-
GWHAAZE00000007CDS6704439067044480-
GWHAAZE00000007CDS6704419967044284-
GWHAAZE00000007CDS6704401067044101-
GWHAAZE00000007CDS6704330967043423-
GWHAAZE00000007CDS6704146067041657-
Transcript Sequence

Network for GWHGAAZE025738

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf711572.70E-43
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12194CHMP4, SNF7, VPS32 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.918
SRR3591706second leaf46.203
SRR3591707mature leaf52.345
SRR3591708Shoot apex54.634
SRR3591709Stem77.671
SRR3591710White floral bud126.525
SRR3591711White flower208.883
SRR3591712Green floral bud75.079
SRR3591713Yellow flower200.674
SRP173429 SRR8316895Juvenile bud stage 44.974
SRR8316896Juvenile bud stage 56.871
SRR8316897Juvenile bud stage 27.065
SRR8316894Third green stage 22.204
SRR8316900Third green stage 56.582
SRR8316901Third green stage 59.306
SRR8316898Complete white stage 53.449
SRR8316899Complete white stage 78.359
SRR8316903Complete white stage 87.684
SRR8316902Silver flowering stage83.081
SRR8316904Silver flowering stage97.348
SRR8316905Silver flowering stage50.538
SRR8316906Gold flowering stage 168.794
SRR8316907Gold flowering stage 155.429
SRR8316908Gold flowering stage 172.973
SRP132670SRR6706286Control74.415
SRR6706287Light intensity 50%67.540
SRR6706288Light intensity 20%65.676
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.570
CNS0095593Slightly white alabastrum(diploid) 246.121
CNS0095594Slightly white alabastrum(diploid) 353.843
CNS0095595Whole white alabastrum(diploid) 250.775
CNS0095596Whole white alabastrum(diploid) 339.213
CNS0095597Whole white alabastrum(diploid) 439.452
CNS0095598Silvery flower (diploied) 168.048
CNS0095599Silvery flower (diploied) 275.908
CNS0095600Silvery flower (diploied) 3148.917
CNS0095601Golden flower (diploid) 175.741
CNS0095602Golden flower (diploid) 2127.903
CNS0095603Golden flower (diploid) 3127.297
CNS0095604Slightly white alabastrum(tetraploid) 154.700
CNS0095605Slightly white alabastrum(tetraploid) 251.713
CNS0095606Slightly white alabastrum(tetraploid) 378.135
CNS0095607Whole white alabastrum(tetraploid) 145.155
CNS0095608Whole white alabastrum(tetraploid) 242.885
CNS0095609Whole white alabastrum(tetraploid) 360.617
CNS0095610Silvery flower (diploied) 1176.512
CNS0095611Silvery flower (diploied) 2149.251
CNS0095612Silvery flower (diploied) 3178.246
CNS0095613Golden flower (tetraploid) 1173.919
CNS0095614Golden flower (tetraploid) 2179.743
CNS0095615Golden flower (tetraploid) 3217.416
CRA001975CRR073297Stem 166.828
CRR073298Stem 257.121
CRR073299Stem 367.786
CRR073300Leaf 151.905
CRR073301Leaf 256.206
CRR073302Leaf 344.615
CRR073303Juvenile bud 164.062
CRR073304Juvenile bud 254.200
CRR073305Juvenile bud 359.244
CRR073306Third green 1123.329
CRR073307Third green 2107.717
CRR073308Third green 397.698
CRR073309Second white 187.457
CRR073310Second white 2139.268
CRR073311Second white 3105.312
CRR073312Silver flowering 1108.280
CRR073313Silver flowering 299.368
CRR073314Silver flowering 3122.024
CRR073315Gold flowering 131.390
CRR073316Gold flowering 250.510
CRR073317Gold flowering 317.054
CRR073318Tawny withering 155.945
CRR073319Tawny withering 261.970
CRR073320Tawny withering 351.766