Gene detail

Detail information of GWHGAAZE025810

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011045960.1	6.8297E-99	PREDICTED: nuclear transcription factor Y subunit A-3-like [Populus euphratica]
Swissprot	tr\|Q9LNP6\|NFYA8_ARATH	1E-38	Nuclear transcription factor Y subunit A-8
trEMBL	tr\|B9HDV6\|B9HDV6_POPTR	9E-96	CCAAT-binding transcription factor family protein {ECO:0000313\|EMBL:EEE91793.1}
TAIR10	AT1G17590.4	6E-34	nuclear factor Y, subunit A8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68222100	68225566	-
GWHAAZE00000007	mRNA	68222100	68225566	-
GWHAAZE00000007	exon	68222100	68222420	-
GWHAAZE00000007	exon	68223196	68223363	-
GWHAAZE00000007	exon	68224035	68224106	-
GWHAAZE00000007	exon	68224184	68224296	-
GWHAAZE00000007	exon	68225266	68225566	-
GWHAAZE00000007	CDS	68225266	68225566	-
GWHAAZE00000007	CDS	68224184	68224296	-
GWHAAZE00000007	CDS	68224035	68224106	-
GWHAAZE00000007	CDS	68223196	68223363	-
GWHAAZE00000007	CDS	68222100	68222420	-

Transcript Sequence
>GWHTAAZE025844 ATGCCCCACTTTTCTGTTAATTCCCCGGCATGGTGGAATTCACCCGAACAGCAATTCCCCATGTCTTTATCCAAGAATTTAAGCTTGAAAGTGGGGTCCACACCCGAACTTCGTCAAGAGCCAAAGAAGCATTTAGGTGTTCAAGCACAAGAACAGGACTCTTCGTCTACTCAATTGACCGGCCAATCTCACCAAGAAGTGACTGCTGTTGGAGGGACCGATTCTCAAGATCAATGCATTTCATCAGATTCTGGTATTGATGCTCTAATTCGTGATCATCAATGTTCTGTAGTTTGCATCTTTCAAGATAAAAGCCATAGAAAGCGTGTAGAGGGTCAAATGAAGCCGGTTTTATTTATGGGAAATCCAGCTTTTGGTGTCAATAATCTGCAAATTGATGTTAACCCATCAATGAATCATATTCCATGTGCTTACGCTGATCCCTTTGCTGGTGGACTATATACTGCCTATGGACCGCCGGCTATTATTCTGCCCCAAACGGGTGGGATAGCGCCTCCACGGGTCCCACTGCCTCTTGATCTTGCAGAAGATGGTCCCATATATGTCAATGCAAAACAATATCACGGGATTCTCAGAAGGAGGCAAGTGCGTGCAAAACTCGAGGCCCAGAACAAGCTTGTCAAAAACCGAAAGCCGTATCTCCACGAGTCTCGCCATCGCCATGCACTTAACAGGGTTAGGGGATCTGGGGGACGCTTTCTCAGCACAAAGAAATCTGACCCTACAAACTCCGGCAACGGTTACAGGTCGACCTGTTTCAGTCAACGGGAGTTCGAGGTACACCAGCTGCTAACTGGCGAGTCTCCGGCGACCTCCGGCATCAGCCACGCCGTCACTGCCGACTCCATCTTTCAGACAGATCGCCGGTTCTCTGGCATTTCTCCCCGTGCTGGTGTCTCTGGCGGGGGGCTAATGCACAGCGGAGCTCAGAACCGAGCTCCGGTAGTCCGGTGA

Network for GWHGAAZE025810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02045.16	CBFB_NFYA	186	240	4.80E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	pathway	mapID
K08064	NFYA, HAP2	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0016602	cellular_component	CCAAT-binding factor complex
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.321
	SRR3591706	second leaf	0.953
	SRR3591707	mature leaf	3.600
	SRR3591708	Shoot apex	4.902
	SRR3591709	Stem	5.141
	SRR3591710	White floral bud	26.202
	SRR3591711	White flower	8.894
	SRR3591712	Green floral bud	24.444
	SRR3591713	Yellow flower	3.878
SRP173429	SRR8316895	Juvenile bud stage	3.217
	SRR8316896	Juvenile bud stage	6.699
	SRR8316897	Juvenile bud stage	1.564
	SRR8316894	Third green stage	1.834
	SRR8316900	Third green stage	1.306
	SRR8316901	Third green stage	0.523
	SRR8316898	Complete white stage	0.221
	SRR8316899	Complete white stage	3.673
	SRR8316903	Complete white stage	1.877
	SRR8316902	Silver flowering stage	0.075
	SRR8316904	Silver flowering stage	0.071
	SRR8316905	Silver flowering stage	0.060
	SRR8316906	Gold flowering stage	0.083
	SRR8316907	Gold flowering stage	0.895
	SRR8316908	Gold flowering stage	0.472
SRP132670	SRR6706286	Control	1.156
	SRR6706287	Light intensity 50%	1.694
	SRR6706288	Light intensity 20%	1.441
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.647
	CNS0095593	Slightly white alabastrum(diploid) 2	3.989
	CNS0095594	Slightly white alabastrum(diploid) 3	6.718
	CNS0095595	Whole white alabastrum(diploid) 2	2.870
	CNS0095596	Whole white alabastrum(diploid) 3	2.299
	CNS0095597	Whole white alabastrum(diploid) 4	9.654
	CNS0095598	Silvery flower (diploied) 1	16.301
	CNS0095599	Silvery flower (diploied) 2	13.023
	CNS0095600	Silvery flower (diploied) 3	2.998
	CNS0095601	Golden flower (diploid) 1	19.266
	CNS0095602	Golden flower (diploid) 2	12.175
	CNS0095603	Golden flower (diploid) 3	9.655
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.339
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.933
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.803
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.941
	CNS0095610	Silvery flower (diploied) 1	0.408
	CNS0095611	Silvery flower (diploied) 2	1.799
	CNS0095612	Silvery flower (diploied) 3	1.641
	CNS0095613	Golden flower (tetraploid) 1	0.962
	CNS0095614	Golden flower (tetraploid) 2	3.690
	CNS0095615	Golden flower (tetraploid) 3	0.499
CRA001975	CRR073297	Stem 1	4.388
	CRR073298	Stem 2	2.844
	CRR073299	Stem 3	5.015
	CRR073300	Leaf 1	1.014
	CRR073301	Leaf 2	0.668
	CRR073302	Leaf 3	0.457
	CRR073303	Juvenile bud 1	0.789
	CRR073304	Juvenile bud 2	0.459
	CRR073305	Juvenile bud 3	0.149
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.666
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.224
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.379
	CRR073312	Silver flowering 1	0.283
	CRR073313	Silver flowering 2	0.798
	CRR073314	Silver flowering 3	0.205
	CRR073315	Gold flowering 1	3.063
	CRR073316	Gold flowering 2	5.216
	CRR073317	Gold flowering 3	3.451
	CRR073318	Tawny withering 1	23.652
	CRR073319	Tawny withering 2	33.025
	CRR073320	Tawny withering 3	16.832