Gene detail

Detail information of GWHGAAZE025832

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267975.1	0	12-oxophytodienoate reductase 3 [Vitis vinifera]
COG	YP_007515197.1	7E-107	N-ethylmaleimide reductase, FMN-linked
Swissprot	tr\|Q9FEW9\|OPR3_SOLLC	0	12-oxophytodienoate reductase 3
trEMBL	tr\|D7TCG0\|D7TCG0_VITVI	0	12-oxophytodienoate reductase 3 protein {ECO:0000313\|EMBL:AFG73688.1}
TAIR10	AT2G06050.3	9E-164	oxophytodienoate-reductase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68629391	68633981	+
GWHAAZE00000007	mRNA	68629391	68633981	+
GWHAAZE00000007	exon	68629391	68629470	+
GWHAAZE00000007	exon	68630187	68630327	+
GWHAAZE00000007	exon	68631882	68632012	+
GWHAAZE00000007	exon	68632307	68632489	+
GWHAAZE00000007	exon	68633320	68633981	+
GWHAAZE00000007	CDS	68629391	68629470	+
GWHAAZE00000007	CDS	68630187	68630327	+
GWHAAZE00000007	CDS	68631882	68632012	+
GWHAAZE00000007	CDS	68632307	68632489	+
GWHAAZE00000007	CDS	68633320	68633981	+

Transcript Sequence
>GWHTAAZE025866 ATGGCAGAAACGTCGTCGCCGCTTGAGAAACCAACTCTCTTTTCTCCATACAAGCTGGGCAAGTTCAACCTCTCCCACAGGGTGGTGCTAGCGCCGATGACTAGGTGCAGGGCACTGAACGGAATTCCGCAGCCGGCGCTGGTTAAGTACTACACTCAGAGATCGACGGACGGCGGGTTTCTCATCACCGAGGGTACCATGATCTCTCCCACGGCCGCCGGGTTTCCTCATGTGCCAGGGATTTACAACAAAGAACAAGTGAATGCTTGGAAGAAAGTGGTAGATGCAGTCCACGCCAAGGGAGCTGTTATTTTCTGTCAACTTTGGCATGTTGGCCGCGCCTCTCATCAAGTGTATCAACCTGGTGGAGCCGCACCAATATCATCCACAAGCAAGCCCATATCAAAGAGATGGAGAATACTGATGCCAGATGCAACCCATGGGATTTACCCAGAACCGCGTGCATTGGCAGCACATGAAATATTGCAGGTGGTAGAAGATTATCGACTAGCGGCCTTGAATGCCATTGAAGCAGGTTTCGATGGCATTGAGATACACGGAGCTCATGGCTATCTCATCGACCAATTTTTGAAAGATGGCATCAATGACCGGACCGACGAGTACGGTGGCTCAATATCAAACCGGTGTAAATTCCTACAGCAGATTGTACAAGCAGTAGCTGCAGCCATTGGTCCAGACCGTGTGGGCATTAGAATATCACCCGCCATCGACCACCTAGACGCCATGGACTCTAACCCACGCATCCTGGGCTTAGCCGTCGTTGAAAGGCTCAACAAATTACAGCTTAACCTCGGGTCAAAGCTCACTTACCTCCACGTCACTCAACCTCGGTACACTGCTTATGGCCAAACTGAGTCAGGCAGGCATGGTAGTGAAGATGAAGAAGCTGAGTTGATAAGGACATGGAGAAGGGCATTTGAGGGAACTTTTATTTGCAGTGGCGGGTACACCCGCGAGCTTGGGCTCGAAGCCGTGGCTCGTGGCGATGCTGATTTGGTGTCTTATGGTCGGCTTTTTATCTCGAACCCGGATTTAGTTTTGAGGTTGAAGATTAATGCACCTCTAAATAGGTATGTGAGAGCTACTTTTTATACACAAGATCCTGTTAAAGGGTACACAGATTACTCTTTTCTCAATAAGGGAAGTGGGGCCCTCGAACCGCTGTCACGACTTTAA

Network for GWHGAAZE025832

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	13	362	4.20E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.909
	SRR3591706	second leaf	55.020
	SRR3591707	mature leaf	65.590
	SRR3591708	Shoot apex	64.589
	SRR3591709	Stem	87.512
	SRR3591710	White floral bud	131.904
	SRR3591711	White flower	93.445
	SRR3591712	Green floral bud	136.107
	SRR3591713	Yellow flower	57.175
SRP173429	SRR8316895	Juvenile bud stage	61.046
	SRR8316896	Juvenile bud stage	53.306
	SRR8316897	Juvenile bud stage	33.249
	SRR8316894	Third green stage	26.589
	SRR8316900	Third green stage	93.009
	SRR8316901	Third green stage	94.424
	SRR8316898	Complete white stage	46.389
	SRR8316899	Complete white stage	168.395
	SRR8316903	Complete white stage	58.581
	SRR8316902	Silver flowering stage	20.067
	SRR8316904	Silver flowering stage	22.667
	SRR8316905	Silver flowering stage	13.268
	SRR8316906	Gold flowering stage	43.436
	SRR8316907	Gold flowering stage	33.600
	SRR8316908	Gold flowering stage	57.008
SRP132670	SRR6706286	Control	100.915
	SRR6706287	Light intensity 50%	109.403
	SRR6706288	Light intensity 20%	123.335
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.013
	CNS0095593	Slightly white alabastrum(diploid) 2	64.040
	CNS0095594	Slightly white alabastrum(diploid) 3	55.721
	CNS0095595	Whole white alabastrum(diploid) 2	57.112
	CNS0095596	Whole white alabastrum(diploid) 3	44.258
	CNS0095597	Whole white alabastrum(diploid) 4	53.893
	CNS0095598	Silvery flower (diploied) 1	49.913
	CNS0095599	Silvery flower (diploied) 2	52.605
	CNS0095600	Silvery flower (diploied) 3	53.905
	CNS0095601	Golden flower (diploid) 1	38.950
	CNS0095602	Golden flower (diploid) 2	61.079
	CNS0095603	Golden flower (diploid) 3	62.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.923
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.979
	CNS0095606	Slightly white alabastrum(tetraploid) 3	147.346
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	117.898
	CNS0095610	Silvery flower (diploied) 1	61.624
	CNS0095611	Silvery flower (diploied) 2	57.760
	CNS0095612	Silvery flower (diploied) 3	77.195
	CNS0095613	Golden flower (tetraploid) 1	23.405
	CNS0095614	Golden flower (tetraploid) 2	49.235
	CNS0095615	Golden flower (tetraploid) 3	34.602
CRA001975	CRR073297	Stem 1	80.662
	CRR073298	Stem 2	79.480
	CRR073299	Stem 3	108.829
	CRR073300	Leaf 1	100.179
	CRR073301	Leaf 2	93.716
	CRR073302	Leaf 3	116.223
	CRR073303	Juvenile bud 1	114.000
	CRR073304	Juvenile bud 2	168.557
	CRR073305	Juvenile bud 3	141.679
	CRR073306	Third green 1	79.846
	CRR073307	Third green 2	82.288
	CRR073308	Third green 3	69.300
	CRR073309	Second white 1	34.816
	CRR073310	Second white 2	24.249
	CRR073311	Second white 3	15.635
	CRR073312	Silver flowering 1	25.363
	CRR073313	Silver flowering 2	36.408
	CRR073314	Silver flowering 3	22.459
	CRR073315	Gold flowering 1	75.501
	CRR073316	Gold flowering 2	91.638
	CRR073317	Gold flowering 3	128.351
	CRR073318	Tawny withering 1	84.921
	CRR073319	Tawny withering 2	118.615
	CRR073320	Tawny withering 3	64.619