Gene detail

Detail information of GWHGAAZE025841

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33917.1	1.5686E-144	hypothetical protein JCGZ_07488 [Jatropha curcas]
COG	YP_504536.1	2E-25	peptidase C1A, papain
Swissprot	tr\|Q8H166\|ALEU_ARATH	1E-137	Thiol protease aleurain (Precursor)
trEMBL	tr\|A0A067KCP8\|A0A067KCP8_JATCU	6E-145	Uncharacterized protein {ECO:0000313\|EMBL:KDP33917.1}
TAIR10	AT5G60360.2	4E-112	aleurain-like protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68753075	68755321	-
GWHAAZE00000007	mRNA	68753075	68755321	-
GWHAAZE00000007	exon	68755270	68755321	-
GWHAAZE00000007	exon	68754970	68755088	-
GWHAAZE00000007	exon	68754691	68754764	-
GWHAAZE00000007	exon	68754306	68754588	-
GWHAAZE00000007	exon	68754078	68754209	-
GWHAAZE00000007	exon	68753269	68753398	-
GWHAAZE00000007	exon	68753075	68753171	-
GWHAAZE00000007	CDS	68755270	68755321	-
GWHAAZE00000007	CDS	68754970	68755088	-
GWHAAZE00000007	CDS	68754691	68754764	-
GWHAAZE00000007	CDS	68754306	68754588	-
GWHAAZE00000007	CDS	68754078	68754209	-
GWHAAZE00000007	CDS	68753269	68753398	-
GWHAAZE00000007	CDS	68753134	68753171	-
GWHAAZE00000007	three_prime_UTR	68753075	68753133	-

Transcript Sequence
>GWHTAAZE025875 ATGATCAGATCGCATAATAAGAGGAACCTTTCTTATAGGCTTGCTATTAATGAGTTTGCTGATTGGACATGGGAAGAATTCAGTAGACATAGTTTGGGAGCTGCTCAAAATTGTTCAGCAACCACAAAGGGCAATCACAAGCTCACTAATGATGTTTTGCCTCCCGAAACGAAAGACTGGAGAGAAATAGGTATTGTCAGCCCCGTGAAAAATCAAGGTGCCTGTGGATCTTGCTGGACATTCAGCTCAACTGGAGCTCTAGAGGCAGCTTATGCACAATCATACGGAAAGCGAATCTCTCTAACTGAGCAGCAGCTAGTGGACTGCGCTACAGCATTTAACAACAATGGCTGCAAAGGTGGATTGCCATCCCAAACATTTGAATACATAAAGTACAACGGCGGTCTTGAAACTGAGGAAGCATATCCTTACACTGCAAAAGATGTTCAATGCAAATTCTCTTCAGAAAATATTGCTGTCAAAGTCCTAGACTCTTGTCAACATTACCCAAGTAAGAGACAATTTTTGGGTGCTGAAGATGAGCTAAAGGATGCTGTGGGAACTGTTAGGCCAGTGAGTGTGGCATTTGAAGTGGTCAGTAGCTTCCGATTTTACAAGGACGATGTTTACACCAGCAACACTTGTGGCAGTGCTCCCATGGATGTGAACCATGCTGTTCTTGCAGTTGGGTATGGAGTTGAAGATGGTGTGCCGTACTGGCTTATTAAGAATTCATGGGGAGCAAACTGGGGCACAACGGCTACTTTAAAATGGAGATGGGAAAGAACATGCATTGCAACTTGCGCGTCATATCCTGATGTCGTGTGAGTGTTCTTGAAGAAAATAAGGCTATCCTCGTGAAAGACTTTATGGATGATGTACAAAAT

Network for GWHGAAZE025841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00112.24	Peptidase_C1	55	259	1.90E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01366	CTSH	Lysosome	map04142
K01366	CTSH	Apoptosis	map04210

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.035
	SRR3591706	second leaf	4.130
	SRR3591707	mature leaf	4.801
	SRR3591708	Shoot apex	8.328
	SRR3591709	Stem	3.855
	SRR3591710	White floral bud	2.547
	SRR3591711	White flower	1.848
	SRR3591712	Green floral bud	4.488
	SRR3591713	Yellow flower	0.698
SRP173429	SRR8316895	Juvenile bud stage	1.311
	SRR8316896	Juvenile bud stage	1.453
	SRR8316897	Juvenile bud stage	0.407
	SRR8316894	Third green stage	1.287
	SRR8316900	Third green stage	3.164
	SRR8316901	Third green stage	3.448
	SRR8316898	Complete white stage	0.490
	SRR8316899	Complete white stage	2.930
	SRR8316903	Complete white stage	2.251
	SRR8316902	Silver flowering stage	0.427
	SRR8316904	Silver flowering stage	1.872
	SRR8316905	Silver flowering stage	1.001
	SRR8316906	Gold flowering stage	2.232
	SRR8316907	Gold flowering stage	2.844
	SRR8316908	Gold flowering stage	1.522
SRP132670	SRR6706286	Control	3.171
	SRR6706287	Light intensity 50%	3.613
	SRR6706288	Light intensity 20%	4.231
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.826
	CNS0095593	Slightly white alabastrum(diploid) 2	2.993
	CNS0095594	Slightly white alabastrum(diploid) 3	3.581
	CNS0095595	Whole white alabastrum(diploid) 2	2.694
	CNS0095596	Whole white alabastrum(diploid) 3	3.351
	CNS0095597	Whole white alabastrum(diploid) 4	2.874
	CNS0095598	Silvery flower (diploied) 1	2.695
	CNS0095599	Silvery flower (diploied) 2	1.621
	CNS0095600	Silvery flower (diploied) 3	1.484
	CNS0095601	Golden flower (diploid) 1	2.770
	CNS0095602	Golden flower (diploid) 2	1.297
	CNS0095603	Golden flower (diploid) 3	1.640
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.272
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.014
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.593
	CNS0095610	Silvery flower (diploied) 1	2.110
	CNS0095611	Silvery flower (diploied) 2	1.956
	CNS0095612	Silvery flower (diploied) 3	2.272
	CNS0095613	Golden flower (tetraploid) 1	2.007
	CNS0095614	Golden flower (tetraploid) 2	2.552
	CNS0095615	Golden flower (tetraploid) 3	3.410
CRA001975	CRR073297	Stem 1	2.618
	CRR073298	Stem 2	2.377
	CRR073299	Stem 3	0.659
	CRR073300	Leaf 1	3.253
	CRR073301	Leaf 2	3.934
	CRR073302	Leaf 3	1.287
	CRR073303	Juvenile bud 1	1.391
	CRR073304	Juvenile bud 2	0.449
	CRR073305	Juvenile bud 3	0.881
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.225
	CRR073308	Third green 3	0.074
	CRR073309	Second white 1	0.193
	CRR073310	Second white 2	0.155
	CRR073311	Second white 3	0.120
	CRR073312	Silver flowering 1	1.074
	CRR073313	Silver flowering 2	0.161
	CRR073314	Silver flowering 3	0.463
	CRR073315	Gold flowering 1	0.294
	CRR073316	Gold flowering 2	0.222
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.783
	CRR073319	Tawny withering 2	1.708
	CRR073320	Tawny withering 3	0.235