Gene detail

Detail information of GWHGAAZE025875

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010273819.1	0	PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Nelumbo nucifera]
COG	YP_183091.1	2E-18	chaperonin subunit alpha
Swissprot	tr\|Q9LUM0\|FAB1B_ARATH	0	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBL	tr\|A0A061GSN9\|A0A061GSN9_THECC	0	Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 1 {ECO:0000313\|EMBL:EOY30134.1}
TAIR10	AT3G14270.1	0	phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69350610	69360508	+
GWHAAZE00000007	mRNA	69350610	69360508	+
GWHAAZE00000007	exon	69350610	69350894	+
GWHAAZE00000007	exon	69351298	69351642	+
GWHAAZE00000007	exon	69352345	69352459	+
GWHAAZE00000007	exon	69352503	69353248	+
GWHAAZE00000007	exon	69353321	69353652	+
GWHAAZE00000007	exon	69355922	69356045	+
GWHAAZE00000007	exon	69356143	69356301	+
GWHAAZE00000007	exon	69356761	69358329	+
GWHAAZE00000007	exon	69359794	69360060	+
GWHAAZE00000007	exon	69360188	69360508	+
GWHAAZE00000007	CDS	69350610	69350894	+
GWHAAZE00000007	CDS	69351298	69351642	+
GWHAAZE00000007	CDS	69352345	69352459	+
GWHAAZE00000007	CDS	69352503	69353248	+
GWHAAZE00000007	CDS	69353321	69353652	+
GWHAAZE00000007	CDS	69355922	69356045	+
GWHAAZE00000007	CDS	69356143	69356301	+
GWHAAZE00000007	CDS	69356761	69358329	+
GWHAAZE00000007	CDS	69359794	69360060	+
GWHAAZE00000007	CDS	69360188	69360508	+

Transcript Sequence
>GWHTAAZE025909 ATGTTTCTACAGTTCCTGTGTTTGTTTTTGACTTGGTATTTGGGTCACATTTACCAATTTTCAATTGATGCATTCTTGTTGCTGAGCTATCTCTGTGTTGCACTGATTATATTTTTTTTCTTCTCTTCTAGTATGGTTGTTAAAGGAGTTGTTTGTAAGAAAAATGTTGCTCATCGGCGAATGACTTCAAAATTTGATAAACCACGGTTTTTAATCCTTGGAGGGGCTCTGGAGTATCAGCGGGTTGCTAACCACTTGTCGAGTTTTGATACTTTATTGCAGCAGGAAATGGATCATCTGAAGATGGCAGTTGCAAAAATTGATGCTCATCACCCAAATGTTCTTTTAGTAGAGAAATCAGTATCTCGATTTGCACAAGAGTACCTGCTTGCAAAGGACATATCACTTGTTCTGAATATTAAGAGGCCACTTTTAGAGCGTATAGCCCGCTGCACAGGTGCACAAATAGTCCCCTCAATTGACCATCTTACATCGCAAAAATTAGGATATTGTGATTCTTTCCATGTGGAGAAGTTTTTGGAAGAGCACATCACTGCTGGGCAAGGTGGGAAGAAATTGACAAAGACTTTGATGTTTTTCGAAGGTTGCCCAAGGCCATTGGGTTGTACTATATTGCTCAAGGGTGCCAATGAGGATGAATTGAAGAAAGTGAAACATGTGGTCCAGTATGGAGTTTTTGCTGCTTATCATTTGGCTCTGGAGACATCTTTTCTTGCTGATGAAGTTGCATTGCCCGATAAACCATCAAGTATCGACAGGTCCATTTCCACAATACCTGGTTTCACCATTGGAAAGCTTAAGGGTTCCCTAAGCTTTGGTGAACCATATCAATCCAGCAGTAGCCTATCATCAGAAATTTCGTCATCAGCCAACATCGTCCCCTCGTGCAACTTAGAAGTAGCACAGCCTTTTTTGCCTAAAGGGCCTACATCTCAAATTCTGAACGTGGAACCTGCTGCAAGCTCTGTGGGATTTTCTGCTTCTGCTGCTTCAGTGTTACTTTCAGGGTATGACTTCTCAGTCCCCCATCAAAACAGGATCTCTTCCAATTTTGTCTTTGAGGAGAATAATAATCTGGGACTCACAGAAAGATCTGAGGCTAAAACATCAGCAGCCAAGATCAGTGAAGTGGTGGGAGATGATAATTTTGTTTCTAATGGCTTTACAGAGGCACTAGGACAAGATGTTTGCCATTTCCATTCTGATGGCAATTTGTTAACTGCAAATTGTCCAGGTAATTCAGAGGTGCCATTTCTAGAACAAGATTGTGATAATCAACATGAGGTAGGTTCACTGAAAGACGAGTTTCCTCCCTCACCTTCTAACCATCAGAGCATTTTAGTATCCTTGTCAAAACGATGTGTTTGGAAGGGAACTGTCTGTGAACGTGCCCACCTCATTCGGATCAAATACTATGGGAGCTTTGATATGCCTTTGGGGCGCTTTTTACGAGACAATATGTTTGATAAGAGCTACCGGTGCCGCTCATGTGAAATGCCATCGGATGCACATGTTCATTGCTATACTCATCAACAAGGCAGCCTTACTATTTCAGTAAAGAAGCTCCCAGAGTTTGTGTTGCCGGGAGAACGGGAAGGTAAAATCTGGATGTGGCACAGGTGCCTGCGATGTCCTAGGATTAATGGGTTCCCTCCTGCCACGAAGAGAGTTGTAATGTCTGATGCTGCATGGGGTCTATCCTTTGGCAAATTCTTGGAGCTCAGCTTTTCCAACCATGCGGCTGCAAGCAGGGTTGCAAATTGTGGCCATTCCCTTCACAGAGATTGTCTCCGGTTCTATGGTTTTGGACGAATGGTTGCTTGTTTTCGCTATGCTTCCATTGATGTTCATTCTGTATATCTCCCGCCCTCAAAGCTTGAATTTAATTATGCTAAGCAGGAGTGGATCCAGAAAGAAGCTGATGAGGTTCGCAGCAGTGCAGATCTCTTATTTGCTGAGGTGTACAATGCTCTTCATAAGATATCTGAGAAAATATTACCTGAATGCGTCACGAAGTCACCTTTATCAACACAGCAAATTGCAGAAGTAGAAGCGAGGCTACAGGAGGAGAAATATGAATTTGAGGCATCACTGCAGCAAGTGCTAAATAAAGATATTAAAGTTGGCAAGCCAGCAATTGACATTTTGGAGATTAATAGACTACAGAAGCAGTTAGTCTTCCTTTCTTATGCCTGGGATCAACGCTTGATATATGTGTCCAGTCTAAGTAACTACAACCTGCAGGAAGGTCTTAGCATTTTTCTACCTAAACTGAATGAAAAACCAATCAGATCTTCTGAGAAGCCCGTTGAAATAAATGCAACTTCCAAAGCTGGTAAACGCTTCAGTAGCTGTGACTCTTTTCTTCTTGATGCAAGGTCCAAAATAAGCCATAATCAAATGGAAAATGGTGGCGACATTAACCAGGCTGATGGGGTCCACAAAGGAAGAGACACTGACCAGGACCCGAATTACAACCTTCGTAGGAAGGAAACAAGGCCTTATCATTCTTCTAGCACAAATACTAACAATCAAGCGGACAGTCTAGATCCTGGGGGAACAGTACGAAGGGTTCTCTCAGAAGGAAGATTCCCTACGATGGAAAACTTATCTGATACCCTGGATGCTGCATGGACTGGTGAAAGTCACCCATCAAGTACCATTCCGCAAGAGAGTGATTGTGCATGTCCTCCTAATCCAGTCACTGCAGACTCTTCAACTGTAGCTGAACCTGTTAGGGCAGATTCGGGTTTGGGATACAGTAAAGATCACCATCGTGAGTCTGAGCTAGGTTCTTCTTTTGGCTTAGCATTACCTACCAAGGGGCAGAGCAGCATGGACAACTCTATAAGTTGGGTGGGAATGCCCTTCTCAAAATTATATCAGTCATTCAATGAGATTTTTTCATCAAATGTGCAAAAGCTTCGTACCTTTAGTGAGTATAATCCTGTGTATGTCTTGTCATTTCGAGAGTTGCTACGCCAAGGTGGTGCCAGGCTGCTTCTGCCTGTGGCAATTACTGACACTGTTGTGCCAGTTTTTGATGACGAACCCACAAGTGCTATAGCATATGCTCTAGTCTCACCTGATTATCAAATCCAAATATCCAAAGAGCCGGAGAGATTGAATGGTATCGAGTCTTCAGTTTCACTGCCGGTTTTAGATGCAGCTAATCTACTATCTCTTAAATCCCTTACCGAGACAACTTCCGAATCCTTAAAAAGTCTTGGGTCAACTGATGAGAGCATCTTATCCATGTCCAGTTCTCGGGGTTCATCAGGGTTGGACCCAGTTTTGTATGCAAAGTTTGTGCATCCCAGAGTGTCTTTTACAGATGAAGGCTCTGTTGGGAAGGTCAAGTATACAGTGACTTGTTACTATGCAAAGAGGTTTGAAGCCTTAAGGAGGACTTGTTGCCCCTCTGAGTTAGACTTCATACGATCCCTCAGTCGTTGCAAGAAGTGGGGTGCACAGGGTGGCAAGAGCAATGTGTTCTTTGCGAAAACCATGGATGACCGTTTTATCATCAAACAGGTTACAAAGACAGAGCTGGAGTCGTTCATCAAATTTGCCCCCGAGTATTTTAAGTACTTATCAGAATCAATCAGCACAGGGAGCCCCACTTGCCTGGCGAAGATCTTGGGTATTTACCAGGTCACAATAAAACATCTTAAAGGAGGGAAAGAGTCTCGGATGGATGTTTTGGTCATGGAGAATCTTCTGTTTAGGCGTAACATAACAAGACTGTATGACCTAAAAGGATCTGCCCGATCAAGATATAACCCCGATTCAAGTGGGAGCAATAAAGTGTTGCTTGATCAGAACCTGATTGAGTCAATGCCAACATCTCCGATCTTTGTGGGAAACAAAGCCAAGCGGTTGCTAGAGAGAGCTGTATGGAATGACACTGCGTTTCTTGCTTCGGCGGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAAGAAAAGCATGAGCTGGTGCTGGGGATAATTGATTTCATGAGGCAGTATACATGGGACAAGCACCTGGAGACATGGGTGAAGGCATCAGGCATACTTGGGGGCCCCAAGAACACTTCTCCAACAGTAATTTCTCCCAAACAGTATAAGAAGCGCTTTAGAAAAGCCATGTCTGCTTATTTTGTCATGGTCCCAGATCAGTGGTCTCCCCCAACCATCATTCCCAGTAGATCCCAGTCTGACCTCTTCTCTCAAGATGACAGACGGGTAGATAGATAA

Network for GWHGAAZE025875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	43	237	5.00E-31
PF01504.19	PIP5K	1165	1331	1.70E-34

Protein Sequence

>GWHPAAZE025893
MFLQFLCLFLTWYLGHIYQFSIDAFLLLSYLCVALIIFFFFSSSMVVKGVVCKKNVAHRRMTSKFDKPRFLILGGALEYQRVANHLSSFDTLLQQEMDHLKMAVAKIDAHHPNVLLVEKSVSRFAQEYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDSFHVEKFLEEHITAGQGGKKLTKTLMFFEGCPRPLGCTILLKGANEDELKKVKHVVQYGVFAAYHLALETSFLADEVALPDKPSSIDRSISTIPGFTIGKLKGSLSFGEPYQSSSSLSSEISSSANIVPSCNLEVAQPFLPKGPTSQILNVEPAASSVGFSASAASVLLSGYDFSVPHQNRISSNFVFEENNNLGLTERSEAKTSAAKISEVVGDDNFVSNGFTEALGQDVCHFHSDGNLLTANCPGNSEVPFLEQDCDNQHEVGSLKDEFPPSPSNHQSILVSLSKRCVWKGTVCERAHLIRIKYYGSFDMPLGRFLRDNMFDKSYRCRSCEMPSDAHVHCYTHQQGSLTISVKKLPEFVLPGEREGKIWMWHRCLRCPRINGFPPATKRVVMSDAAWGLSFGKFLELSFSNHAAASRVANCGHSLHRDCLRFYGFGRMVACFRYASIDVHSVYLPPSKLEFNYAKQEWIQKEADEVRSSADLLFAEVYNALHKISEKILPECVTKSPLSTQQIAEVEARLQEEKYEFEASLQQVLNKDIKVGKPAIDILEINRLQKQLVFLSYAWDQRLIYVSSLSNYNLQEGLSIFLPKLNEKPIRSSEKPVEINATSKAGKRFSSCDSFLLDARSKISHNQMENGGDINQADGVHKGRDTDQDPNYNLRRKETRPYHSSSTNTNNQADSLDPGGTVRRVLSEGRFPTMENLSDTLDAAWTGESHPSSTIPQESDCACPPNPVTADSSTVAEPVRADSGLGYSKDHHRESELGSSFGLALPTKGQSSMDNSISWVGMPFSKLYQSFNEIFSSNVQKLRTFSEYNPVYVLSFRELLRQGGARLLLPVAITDTVVPVFDDEPTSAIAYALVSPDYQIQISKEPERLNGIESSVSLPVLDAANLLSLKSLTETTSESLKSLGSTDESILSMSSSRGSSGLDPVLYAKFVHPRVSFTDEGSVGKVKYTVTCYYAKRFEALRRTCCPSELDFIRSLSRCKKWGAQGGKSNVFFAKTMDDRFIIKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAKILGIYQVTIKHLKGGKESRMDVLVMENLLFRRNITRLYDLKGSARSRYNPDSSGSNKVLLDQNLIESMPTSPIFVGNKAKRLLERAVWNDTAFLASADVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNTSPTVISPKQYKKRFRKAMSAYFVMVPDQWSPPTIIPSRSQSDLFSQDDRRVDR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0005524	molecular_function	ATP binding
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.460
	SRR3591706	second leaf	14.918
	SRR3591707	mature leaf	34.898
	SRR3591708	Shoot apex	12.349
	SRR3591709	Stem	12.611
	SRR3591710	White floral bud	9.817
	SRR3591711	White flower	12.377
	SRR3591712	Green floral bud	15.392
	SRR3591713	Yellow flower	10.465
SRP173429	SRR8316895	Juvenile bud stage	8.663
	SRR8316896	Juvenile bud stage	10.622
	SRR8316897	Juvenile bud stage	4.287
	SRR8316894	Third green stage	4.116
	SRR8316900	Third green stage	8.074
	SRR8316901	Third green stage	8.017
	SRR8316898	Complete white stage	1.793
	SRR8316899	Complete white stage	10.154
	SRR8316903	Complete white stage	5.350
	SRR8316902	Silver flowering stage	2.952
	SRR8316904	Silver flowering stage	4.692
	SRR8316905	Silver flowering stage	2.463
	SRR8316906	Gold flowering stage	6.011
	SRR8316907	Gold flowering stage	5.740
	SRR8316908	Gold flowering stage	6.563
SRP132670	SRR6706286	Control	7.974
	SRR6706287	Light intensity 50%	8.366
	SRR6706288	Light intensity 20%	8.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.796
	CNS0095593	Slightly white alabastrum(diploid) 2	7.196
	CNS0095594	Slightly white alabastrum(diploid) 3	7.888
	CNS0095595	Whole white alabastrum(diploid) 2	6.368
	CNS0095596	Whole white alabastrum(diploid) 3	4.399
	CNS0095597	Whole white alabastrum(diploid) 4	5.536
	CNS0095598	Silvery flower (diploied) 1	10.526
	CNS0095599	Silvery flower (diploied) 2	9.970
	CNS0095600	Silvery flower (diploied) 3	11.942
	CNS0095601	Golden flower (diploid) 1	10.655
	CNS0095602	Golden flower (diploid) 2	16.177
	CNS0095603	Golden flower (diploid) 3	15.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.213
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.746
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.509
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.779
	CNS0095610	Silvery flower (diploied) 1	12.323
	CNS0095611	Silvery flower (diploied) 2	15.569
	CNS0095612	Silvery flower (diploied) 3	6.332
	CNS0095613	Golden flower (tetraploid) 1	7.143
	CNS0095614	Golden flower (tetraploid) 2	10.402
	CNS0095615	Golden flower (tetraploid) 3	13.054
CRA001975	CRR073297	Stem 1	13.987
	CRR073298	Stem 2	11.966
	CRR073299	Stem 3	11.431
	CRR073300	Leaf 1	10.925
	CRR073301	Leaf 2	9.946
	CRR073302	Leaf 3	7.131
	CRR073303	Juvenile bud 1	8.838
	CRR073304	Juvenile bud 2	3.885
	CRR073305	Juvenile bud 3	14.185
	CRR073306	Third green 1	1.473
	CRR073307	Third green 2	1.283
	CRR073308	Third green 3	2.203
	CRR073309	Second white 1	1.603
	CRR073310	Second white 2	2.210
	CRR073311	Second white 3	2.432
	CRR073312	Silver flowering 1	1.944
	CRR073313	Silver flowering 2	1.473
	CRR073314	Silver flowering 3	1.777
	CRR073315	Gold flowering 1	13.343
	CRR073316	Gold flowering 2	18.773
	CRR073317	Gold flowering 3	11.602
	CRR073318	Tawny withering 1	8.502
	CRR073319	Tawny withering 2	7.506
	CRR073320	Tawny withering 3	7.285