Gene detail

Detail information of GWHGAAZE025945

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007012061.1	0	Aspartate aminotransferase 3 [Theobroma cacao]
COG	YP_002892667.1	5E-129	aromatic amino acid aminotransferase
Swissprot	tr\|P46644\|AAT3_ARATH	0	Aspartate aminotransferase 3, chloroplastic (Precursor)
trEMBL	tr\|A0A061GIL3\|A0A061GIL3_THECC	0	Aspartate aminotransferase {ECO:0000256\|RuleBase:RU000480}
TAIR10	AT5G11520.1	0	aspartate aminotransferase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70605426	70611586	+
GWHAAZE00000007	mRNA	70605426	70611586	+
GWHAAZE00000007	exon	70605426	70605602	+
GWHAAZE00000007	exon	70607410	70607481	+
GWHAAZE00000007	exon	70607768	70607829	+
GWHAAZE00000007	exon	70607940	70608023	+
GWHAAZE00000007	exon	70609046	70609145	+
GWHAAZE00000007	exon	70609241	70609361	+
GWHAAZE00000007	exon	70609494	70609657	+
GWHAAZE00000007	exon	70609803	70609940	+
GWHAAZE00000007	exon	70610219	70610340	+
GWHAAZE00000007	exon	70610719	70610813	+
GWHAAZE00000007	exon	70610945	70611065	+
GWHAAZE00000007	exon	70611502	70611586	+
GWHAAZE00000007	CDS	70605426	70605602	+
GWHAAZE00000007	CDS	70607410	70607481	+
GWHAAZE00000007	CDS	70607768	70607829	+
GWHAAZE00000007	CDS	70607940	70608023	+
GWHAAZE00000007	CDS	70609046	70609145	+
GWHAAZE00000007	CDS	70609241	70609361	+
GWHAAZE00000007	CDS	70609494	70609657	+
GWHAAZE00000007	CDS	70609803	70609940	+
GWHAAZE00000007	CDS	70610219	70610340	+
GWHAAZE00000007	CDS	70610719	70610813	+
GWHAAZE00000007	CDS	70610945	70611065	+
GWHAAZE00000007	CDS	70611502	70611586	+

Transcript Sequence
>GWHTAAZE025979 ATGTTAGGAGGAGAGTTATCGTCACCGGCCGATCGGAGGTTAGGAGCTCTTGCTCGACACCTCCAAGGCTCAAAAGCAACAGCAGCAATCCAAGTATCTGCTTCACCCACTTCGGCCTTCAATGGCGATTCTGTTTTCGCTCACGTCGCTCGTGGTCCTGAAGATCCCATCCTCGGAGTTACTGTAGCATATAACAAAGATCCCAGTCCAGTGAAGTTGAATTTGGGTGTTGGCGCTTATCGAACAGAGGAAGGAAAGCCTCTTGTGCTGAATGTTGTGAGACAGGCAGAGCAGATACTTGTTAATGACAGGTCTCGCGTAAAGGAATATCTCCCCATTGTTGGACTGGCAGATTTTAATAAATTAAGTGCTAAGCTCATACTCGGTGCTGACAGTCCTGCTATTCAAGAGAACAGAGTTACAACTGTTCAGTGCTTGTCTGGTACTGGCTCATTGAGGGTTGGAGCTGAGTTTTTGGCCAAACATTATCACCAACGCACTATATATATTCCCCTCCCAACATGGGGTAACCACACAAAAGTTTTCAATCTAGCTGGATTGTCTGTGAAAACTTACCGCTATTATGATCCAGCAACTCGTGGACTCAGCTTCCAAGGCTTGTTGGAAGACCTTGGTTCTGCTCCATCAGGAGCAATTGTGCTTCTTCATGCATGTGCCCATAACCCTACTGGTGTTGATCCCACGCTTCAGCAATGGGCTCAGATAAGGCAGTTGATGAGATCAAAAGGGCTGTTGCCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTGGATGGAGATGCACAACCTGTTCGTATGTTTGTTCGCGATGGGGGTGAATTGCTAGTAGCTCAGAGTTATGCAAAGAATATGGGGCTCTATGGGGAACGTGTTGGTGCACTAAGCATTGTTTGCAAGAGTGCTGACGTGGCAAGTAGGGTTGAGAGCCAATTGAAACTTGTGATCAGACCCATGTATTCAAACCCACCTATTCATGGTGCCTCTATTGTTGCTACCATTCTCAAGGACAGTAACATGTTCCACGATTGGACCTTGGAGCTGAAGGCAATGGCCGACCGTATTATTAGCATGCGTCAGCAACTGTTTGACGCTTTACGTGCTAGAGGTACACCTGGCGATTGGAGTCATATTATTAAGCAGATTGGAATGTTCACATTCACTGGACTAAATTCAGATCAAGTGGCCTTCATGACTAGAGAATACCATATCTACATGACCTCTGATGGGAGGATAAGCATGGCAGGGCTGAGCTCTAGGACAGTTCCACACCTAGCAGACGCAATACATGCCGCTGTTACCACCCGTGCCTAA

Network for GWHGAAZE025945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	72	438	1.40E-95

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14454	GOT1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Carbon fixation in photosynthetic organisms	map00710
		Alanine, aspartate and glutamate metabolism	map00250
		Cysteine and methionine metabolism	map00270
		Arginine biosynthesis	map00220
		Arginine and proline metabolism	map00330
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity
GO:0008483	molecular_function	transaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.399
	SRR3591706	second leaf	16.947
	SRR3591707	mature leaf	9.450
	SRR3591708	Shoot apex	24.083
	SRR3591709	Stem	40.538
	SRR3591710	White floral bud	141.398
	SRR3591711	White flower	150.318
	SRR3591712	Green floral bud	49.989
	SRR3591713	Yellow flower	273.704
SRP173429	SRR8316895	Juvenile bud stage	19.738
	SRR8316896	Juvenile bud stage	35.615
	SRR8316897	Juvenile bud stage	17.437
	SRR8316894	Third green stage	14.362
	SRR8316900	Third green stage	56.840
	SRR8316901	Third green stage	50.978
	SRR8316898	Complete white stage	68.412
	SRR8316899	Complete white stage	58.192
	SRR8316903	Complete white stage	85.124
	SRR8316902	Silver flowering stage	82.152
	SRR8316904	Silver flowering stage	106.527
	SRR8316905	Silver flowering stage	56.426
	SRR8316906	Gold flowering stage	254.684
	SRR8316907	Gold flowering stage	209.859
	SRR8316908	Gold flowering stage	155.975
SRP132670	SRR6706286	Control	66.000
	SRR6706287	Light intensity 50%	65.419
	SRR6706288	Light intensity 20%	61.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.776
	CNS0095593	Slightly white alabastrum(diploid) 2	29.613
	CNS0095594	Slightly white alabastrum(diploid) 3	33.906
	CNS0095595	Whole white alabastrum(diploid) 2	29.821
	CNS0095596	Whole white alabastrum(diploid) 3	38.312
	CNS0095597	Whole white alabastrum(diploid) 4	29.051
	CNS0095598	Silvery flower (diploied) 1	96.555
	CNS0095599	Silvery flower (diploied) 2	107.248
	CNS0095600	Silvery flower (diploied) 3	356.889
	CNS0095601	Golden flower (diploid) 1	152.807
	CNS0095602	Golden flower (diploid) 2	455.299
	CNS0095603	Golden flower (diploid) 3	457.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.873
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.069
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	85.607
	CNS0095610	Silvery flower (diploied) 1	208.132
	CNS0095611	Silvery flower (diploied) 2	341.956
	CNS0095612	Silvery flower (diploied) 3	350.553
	CNS0095613	Golden flower (tetraploid) 1	253.223
	CNS0095614	Golden flower (tetraploid) 2	298.846
	CNS0095615	Golden flower (tetraploid) 3	368.477
CRA001975	CRR073297	Stem 1	40.401
	CRR073298	Stem 2	35.888
	CRR073299	Stem 3	40.013
	CRR073300	Leaf 1	54.602
	CRR073301	Leaf 2	50.164
	CRR073302	Leaf 3	59.512
	CRR073303	Juvenile bud 1	68.979
	CRR073304	Juvenile bud 2	91.698
	CRR073305	Juvenile bud 3	63.513
	CRR073306	Third green 1	214.636
	CRR073307	Third green 2	140.631
	CRR073308	Third green 3	152.830
	CRR073309	Second white 1	283.816
	CRR073310	Second white 2	234.476
	CRR073311	Second white 3	210.783
	CRR073312	Silver flowering 1	251.407
	CRR073313	Silver flowering 2	235.667
	CRR073314	Silver flowering 3	264.036
	CRR073315	Gold flowering 1	8.293
	CRR073316	Gold flowering 2	9.588
	CRR073317	Gold flowering 3	10.689
	CRR073318	Tawny withering 1	35.135
	CRR073319	Tawny withering 2	22.082
	CRR073320	Tawny withering 3	17.713