Gene detail

Detail information of GWHGAAZE025992

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAD30037.1	3.8546E-130	gibberellin 3beta-hydroxylase3 [Daucus carota]
COG	YP_007565700.1	5E-20	putative oxidoreductase
Swissprot	tr\|O24648\|G3OX_PEA	9E-99	Gibberellin 3-beta-dioxygenase 1
trEMBL	tr\|Q6F6H5\|Q6F6H5_DAUCA	1E-130	Gibberellin 3beta-hydroxylase3 {ECO:0000313\|EMBL:BAD30037.1}
TAIR10	AT4G21690.1	5E-70	gibberellin 3-oxidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	71412574	71417206	+
GWHAAZE00000007	mRNA	71412574	71417206	+
GWHAAZE00000007	exon	71412574	71413052	+
GWHAAZE00000007	exon	71416744	71417206	+
GWHAAZE00000007	CDS	71412574	71413052	+
GWHAAZE00000007	CDS	71416744	71417206	+

Transcript Sequence
>GWHTAAZE026026 ATGAATAATATGAGTAATGGCAATCTTTTTGAAGCCTATAGAGAAAACTCTCTCAATGTTCAACATATTATCCCGATAGATTTCGACTCCGTTGACACCTTGCCGGAATCCCACGTATGGCCTCTCTCCGATGACTTATCCGGTTGGAATGAGTCGGTACCCGTCATAGACCTTGCGGATCCCAATGCGGCCGAGCTTGTGGGGAAGGCGTCGGAAAAGTGGGGCATGTTTCAAGTGACTAACCATGGGATCCCCTCGAGCTTGGTGGAGGATGTGGAGGCAGAAGCACGGCGGCTCTTCCGCCTGCCGGCGGTGGACAAGGCTATGGTTTTGAGGTCGCCAGAGGGAGCCACTGGCTACGGGGCAGCGAGAATATCGGCTTTTTTCCCAAAGTTTATGTGGCATGAAGGGTTCACTATCATGGGTTCTTGCGCTGATCATGCAAGAAAACTTTGGCCAAATGATTATCAACATTTTTGCATTACCTCAACAAATCCCAATCACAATCCACAACCACAAGGCGCACTCCAATTGAACTCTTACCCGACATGTCCAGACCCCACCCGAGCAATCGGCCTGGCCCCACACACTGACTCACTCCTCCTCACCATCCTCCACCAAGGCCAAACCAACGGCCTCCAACTCTTCCGGGTCGGATCCTGGATCCCGGTCGAACCTGTCAATGGAGCACTGGTGGTCAACGTCGGGGATCTGCTCCATATATTATCGAATGCTAAGTTGCCCACGGCTTATCACCGCGTGGTTGTGAATAAGAGTGAGACAAGGATGTCTTTTGCTTACTTTTATGGATCTCCGGTGGATTTTCCGGTTGGACCGTTGTCGGAGATTGAGATTCCGGTGTATCGGAGTTTGTCGCTGAAGGAGTATATCGGGCTTAAGGCTAAGTACCTCGATAAGGCGCTTGAATTCATAAGAATTTAG

Network for GWHGAAZE025992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	53	153	3.30E-18
PF03171.21	2OG-FeII_Oxy	176	270	1.60E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04124	E1.14.11.15	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.123
	SRR3591708	Shoot apex	0.274
	SRR3591709	Stem	0.603
	SRR3591710	White floral bud	0.198
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.124
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.124
	SRR8316900	Third green stage	0.184
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.224
	SRR8316899	Complete white stage	0.668
	SRR8316903	Complete white stage	0.160
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.241
	SRR6706287	Light intensity 50%	0.199
	SRR6706288	Light intensity 20%	0.338
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.092
	CNS0095593	Slightly white alabastrum(diploid) 2	0.022
	CNS0095594	Slightly white alabastrum(diploid) 3	0.016
	CNS0095595	Whole white alabastrum(diploid) 2	0.080
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.083
	CNS0095601	Golden flower (diploid) 1	0.127
	CNS0095602	Golden flower (diploid) 2	0.135
	CNS0095603	Golden flower (diploid) 3	0.092
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.179
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.336
	CNS0095610	Silvery flower (diploied) 1	0.026
	CNS0095611	Silvery flower (diploied) 2	0.013
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.059
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.035
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.749
	CRR073305	Juvenile bud 3	0.344
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.043
	CRR073309	Second white 1	0.123
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.141
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.320
	CRR073319	Tawny withering 2	0.035
	CRR073320	Tawny withering 3	0.605