Gene detail

Detail information of GWHGAAZE026023

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267835.1	0	PREDICTED: uncharacterized protein LOC100244378 [Vitis vinifera]
trEMBL	tr\|F6GYK9\|F6GYK9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45045.1}
TAIR10	AT1G78930.1	2E-150	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	71983980	71988550	-
GWHAAZE00000007	mRNA	71983980	71988550	-
GWHAAZE00000007	exon	71983980	71984304	-
GWHAAZE00000007	exon	71984684	71984901	-
GWHAAZE00000007	exon	71985507	71985689	-
GWHAAZE00000007	exon	71986157	71986270	-
GWHAAZE00000007	exon	71986785	71987030	-
GWHAAZE00000007	exon	71987164	71987298	-
GWHAAZE00000007	exon	71987939	71988550	-
GWHAAZE00000007	CDS	71987939	71988550	-
GWHAAZE00000007	CDS	71987164	71987298	-
GWHAAZE00000007	CDS	71986785	71987030	-
GWHAAZE00000007	CDS	71986157	71986270	-
GWHAAZE00000007	CDS	71985507	71985689	-
GWHAAZE00000007	CDS	71984684	71984901	-
GWHAAZE00000007	CDS	71983980	71984304	-

Transcript Sequence
>GWHTAAZE026057 ATGTCTTCAACTTTGGTTTCCTTTACAAATAGTTGGATAATTTCACCCTCAAATCATCATCGTCGTTTCCATCACCTTCAAACTCATCAGGTGCTCTTTTATTCCAACAGATTGTTCCCCCTCCCTAGAAGAATCAATTTCCTTCCCCGCAAACATCAATTTCCCTGTACATTCTCTTCACAGAGGTCTGCTTTCGAAAACCCTAATATTTATGGTTTTGAAGACAGCAACGACTCAACCATCAGCATAGAAGACAAAGAACTAGAACAAGCAAGAGAGGTTGTATCAGAGATTCTCCAAAATTTTGGGGTTTCCAAGGAGGAATCAATTGAAATTGCTTTGAATTCGCCCAAGTATGTAAAAATGTTGACGGATGGAGTTCGAGAACTAGACGACCTCTCTTTATGGAATTCATGGAGCAGCAAAGAAGGTGAAGGTGGAGAAGTAGTGGAAATTGGCACACAATTCAAGAAGAAGGTTTATCATATGGCCAAGAAGAAAGGGGACAAGGGAATGCTTCCTCTTTTGGAGAGTGTGGGTTTGAGTCTATCTTCTTCAATGCATTTGGCCCGCTATCTATCGTCCCAAACGCTTCCAAATGTCATTCTCAAGGTTAAGTATATGAAGGAAATATTATTCTCTGGCAGTAATGATCGACCTATTGGAAAAAATGCCCGCCGTATGATGATGCACCTCTCAATTCCTATTGACGAGGATTTGCAACAAACTTTATCATTTTTTGAGAAGATTCAAGCAAGGCGTGGAGGTATTGATTTGTTAGATGTTGGAGATGTCTATTTTCGATACCTCATTGAATCATTTCCACGTCTTCTTTTGCTACAAGTGGAATCCAAATTGATGCCAAAAGTGGAGTTTCTTGAAACTATTGGTGTCCCTAAAGGATGCATGAGAAGTATTCTGTTATTGTTTCCACCCATTGTTTTCTACAACATTGAGAAGGATATTAAACCAAGAATACATGCTTTCGAAAAGGTCAATATAGGAGAGAAGGATTTTGGGAGGATGTTGGTGAAGTATCCATGGATTCTTTCTGAAAGCATTCAAGAAAATTGTGAGGAAATCCTTTATTTCTTTGACATGCACAAGGTACCAAAAGTTAGCATTGAGCGTGCAATAAAAAGCTGGCCTCATATATTGGGTTGTTCAACTACCAATCTGAAGCTGATGATAGAACAGTTTGCAGAACTAGGCATTAGGGGCAAGAAACTGGGTCAAGTCATTGCTAAAAGTCCTCAACTACTACTTCATAAATCTCAGGAATTTCTTCAGGTGGTACGTTTTTTGGAAGAGTTGGGACTTGATGAGGAAAGTGTTGGTAAAATACTTGGACGATGTCCTGAAATATTTCGTACAAGCATTGACACTGTTCTCAAGAAAAAGATTGAATTCCTTGTTGATATGGGAGTTTCTAGGAAGCATCTTCCTCGGGTTATCAAAAAATATCCGGAGCTTTTTGTATGCGACATTGAGAAAGCATTGCGCCCAAGGATGAAGTATTTGATGGAGAGTGGGGGTTTGTCAGAAAGGGAAGTAGTAACGATGGTGTGCAAGTTCTCGCCAATATTAGGGTACAGCATAGAAGAGGTATTGGGACCAAAGTTGGAGTTCTTGGTGAAGACGATGGGAATGCCAGTGAGGGAGGTTGTTGAGTATCCGAGATTTTTTAGCTACTCTTTGGAGAAGAAGATTCAACGTAGATTTTGGGTGCTCAAATCTAGAAATTTCAAATGCAGCTTGAAGGATATGTTGGCTAAGAATGATGATGAATTTGCCTCCGAGTTTATTCTTCCTTCTTCCCTTGAAGTTGAATGA

Network for GWHGAAZE026023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	290	598	5.20E-99

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.620
	SRR3591706	second leaf	8.175
	SRR3591707	mature leaf	11.095
	SRR3591708	Shoot apex	11.010
	SRR3591709	Stem	9.576
	SRR3591710	White floral bud	7.129
	SRR3591711	White flower	7.987
	SRR3591712	Green floral bud	6.562
	SRR3591713	Yellow flower	6.886
SRP173429	SRR8316895	Juvenile bud stage	5.023
	SRR8316896	Juvenile bud stage	7.276
	SRR8316897	Juvenile bud stage	3.957
	SRR8316894	Third green stage	3.078
	SRR8316900	Third green stage	9.804
	SRR8316901	Third green stage	6.582
	SRR8316898	Complete white stage	3.995
	SRR8316899	Complete white stage	8.236
	SRR8316903	Complete white stage	5.721
	SRR8316902	Silver flowering stage	3.776
	SRR8316904	Silver flowering stage	6.068
	SRR8316905	Silver flowering stage	3.570
	SRR8316906	Gold flowering stage	11.597
	SRR8316907	Gold flowering stage	8.892
	SRR8316908	Gold flowering stage	9.376
SRP132670	SRR6706286	Control	1.909
	SRR6706287	Light intensity 50%	2.124
	SRR6706288	Light intensity 20%	2.140
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.804
	CNS0095593	Slightly white alabastrum(diploid) 2	3.041
	CNS0095594	Slightly white alabastrum(diploid) 3	3.999
	CNS0095595	Whole white alabastrum(diploid) 2	4.286
	CNS0095596	Whole white alabastrum(diploid) 3	4.666
	CNS0095597	Whole white alabastrum(diploid) 4	4.020
	CNS0095598	Silvery flower (diploied) 1	7.419
	CNS0095599	Silvery flower (diploied) 2	6.287
	CNS0095600	Silvery flower (diploied) 3	8.958
	CNS0095601	Golden flower (diploid) 1	6.480
	CNS0095602	Golden flower (diploid) 2	7.490
	CNS0095603	Golden flower (diploid) 3	8.211
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.808
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.363
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.778
	CNS0095610	Silvery flower (diploied) 1	7.787
	CNS0095611	Silvery flower (diploied) 2	9.564
	CNS0095612	Silvery flower (diploied) 3	8.281
	CNS0095613	Golden flower (tetraploid) 1	4.631
	CNS0095614	Golden flower (tetraploid) 2	5.667
	CNS0095615	Golden flower (tetraploid) 3	6.385
CRA001975	CRR073297	Stem 1	3.355
	CRR073298	Stem 2	3.911
	CRR073299	Stem 3	2.434
	CRR073300	Leaf 1	3.762
	CRR073301	Leaf 2	3.064
	CRR073302	Leaf 3	2.406
	CRR073303	Juvenile bud 1	1.619
	CRR073304	Juvenile bud 2	1.797
	CRR073305	Juvenile bud 3	2.325
	CRR073306	Third green 1	1.430
	CRR073307	Third green 2	1.189
	CRR073308	Third green 3	0.974
	CRR073309	Second white 1	3.316
	CRR073310	Second white 2	2.493
	CRR073311	Second white 3	2.136
	CRR073312	Silver flowering 1	2.837
	CRR073313	Silver flowering 2	2.334
	CRR073314	Silver flowering 3	1.679
	CRR073315	Gold flowering 1	5.339
	CRR073316	Gold flowering 2	10.948
	CRR073317	Gold flowering 3	7.755
	CRR073318	Tawny withering 1	2.131
	CRR073319	Tawny withering 2	2.813
	CRR073320	Tawny withering 3	1.809