Gene detail

Detail information of GWHGAAZE026055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081538.1	0	PREDICTED: probable glycosyltransferase At5g25310 [Sesamum indicum]
Swissprot	tr\|Q3E7Q9\|GLYT6_ARATH	0	Probable glycosyltransferase At5g25310
trEMBL	tr\|D7SUW5\|D7SUW5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21064.3}
TAIR10	AT5G25310.1	5E-136	Exostosin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72502781	72507600	-
GWHAAZE00000007	mRNA	72502781	72507600	-
GWHAAZE00000007	exon	72507376	72507600	-
GWHAAZE00000007	exon	72506635	72506780	-
GWHAAZE00000007	exon	72504464	72504815	-
GWHAAZE00000007	exon	72502781	72503446	-
GWHAAZE00000007	CDS	72507376	72507600	-
GWHAAZE00000007	CDS	72506635	72506780	-
GWHAAZE00000007	CDS	72504464	72504815	-
GWHAAZE00000007	CDS	72502781	72503446	-

Transcript Sequence
>GWHTAAZE026089 ATGCTGCTTTTGGTAATCTCCGGTCACTTCGATTCCTCGATGCCATTTGATGGATCCAAATCGGAGTACAGTGTGCCGATCGTTGAGTTGTTGACTAGACCTGCTAATGGAGTCTCCGATCATGACGAGGTCCGAGCTGTTTCTAGTTCTGAGTACAGATCATCAACATCATCCAGTACTGATTCAATCGCTGTCAATCGCCGATCGAGAAATAGGAATGTCGTTAGAGAAGACAAAAGGCTCGAGCAAGGACTCGCTCGAGCACGTGCCGCTATTCGAAAAGCGGCTTCACTTCAAAATCCATCTGCAATCGTTAGCGGTCATGAAGTTCCGGCCGGTCGCATATACCGTAACCCCGGCGCATTTTATCAGAGCTATAAGGAAATGGAGAGGAGGTTGAAGGTATACGTGTACGAAGAAGGGGAGCTACCAATAGTACACGATGGGCCGTGCAAAGACATATACACAACAGAAGGAAGATTCATACACGAGATAGAGCATGGGAAGAGTAAGTTCAAGACAAAGAATGCGGAAAATGCTCACGTTTACTTCATGCCCTTCAGTGTAACCATGATGGTGAAGTACCTCTACAAGCCTTACTCTTACAACGTGACTCCGCTCAAAGAATTTGTGTCTGATTATGTGAGAGTCATCTCCACCAAACACCCCTTTTGGAACCGTACTTACGGCGCTGATCACTTCATGCTCTCCTGTCATGATTGGGGTCCCCATGCCTCAAAAGGTAACCCACTCCTCTACAACACATCAATTCGAGCCCTGTGCAATGCCAACTCCTCCGAAGGCTTCAACCCCCAAAAAGATGTCACTCTCCCTGAGATCCACCTCTACGACGGCAACATCCCCAAGAAGCTCCGCCTTCCACAACCACCCACTACCCCTCGGCCCCACCTCGCCTTCTTTGCCGGTGGCCTCCATGGCCCCATCCGGCCCCTCCTCCTCCACCACTGGAAAAACAAAGACCCACTCCTCCCTATCTTCGAATACCTACCCAAAAACCTAGACTACCACACTTTCATGCTAAACTCAAAGTTTTGCCTTTGCCCTAGTGGGCATGAGGTTGCTAGTCCTAGAATTGTAGAGGCAATTTATGCAGAGTGTGTGCCGGTGATAATCTCCGATCACTATGTTTTGCCATTCAGTGATGTGCTCCGGTGGGAAGGGTTCTCGGTGAGGGTGGAAGTGGCAGAGATACCACAATTGAAAGAGTTTCTTGGTGGGGTTAGTGAGGAGGAGTATTTGAGGTTGAAGGAAGGGGTGAGGGCTGTGCGGAGGCATTTTGTATTGAATCAACCGGCTAAGAGTTTTGATGCTTTTCATATGATTTTACATTCTGTTTGGCTTAGGAGAATTAATGTTAGAATTGGATAA

Network for GWHGAAZE026055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0222	GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03016.16	Exostosin	130	411	7.90E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.106
	SRR3591706	second leaf	0.953
	SRR3591707	mature leaf	0.576
	SRR3591708	Shoot apex	1.765
	SRR3591709	Stem	0.159
	SRR3591710	White floral bud	0.710
	SRR3591711	White flower	0.072
	SRR3591712	Green floral bud	1.164
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.849
	SRR8316896	Juvenile bud stage	2.633
	SRR8316897	Juvenile bud stage	1.820
	SRR8316894	Third green stage	1.025
	SRR8316900	Third green stage	1.042
	SRR8316901	Third green stage	1.559
	SRR8316898	Complete white stage	0.181
	SRR8316899	Complete white stage	0.695
	SRR8316903	Complete white stage	0.545
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.902
	SRR6706287	Light intensity 50%	1.330
	SRR6706288	Light intensity 20%	0.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.473
	CNS0095593	Slightly white alabastrum(diploid) 2	1.742
	CNS0095594	Slightly white alabastrum(diploid) 3	2.306
	CNS0095595	Whole white alabastrum(diploid) 2	0.610
	CNS0095596	Whole white alabastrum(diploid) 3	1.956
	CNS0095597	Whole white alabastrum(diploid) 4	0.335
	CNS0095598	Silvery flower (diploied) 1	0.060
	CNS0095599	Silvery flower (diploied) 2	0.364
	CNS0095600	Silvery flower (diploied) 3	0.030
	CNS0095601	Golden flower (diploid) 1	0.241
	CNS0095602	Golden flower (diploid) 2	0.165
	CNS0095603	Golden flower (diploid) 3	0.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.961
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.581
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.659
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.353
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.235
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.833
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.260
	CNS0095612	Silvery flower (diploied) 3	0.269
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.140
	CRR073298	Stem 2	2.845
	CRR073299	Stem 3	5.896
	CRR073300	Leaf 1	0.695
	CRR073301	Leaf 2	0.796
	CRR073302	Leaf 3	1.118
	CRR073303	Juvenile bud 1	0.397
	CRR073304	Juvenile bud 2	0.143
	CRR073305	Juvenile bud 3	0.386
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.024
	CRR073308	Third green 3	0.158
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.064
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.135
	CRR073316	Gold flowering 2	0.037
	CRR073317	Gold flowering 3	0.163
	CRR073318	Tawny withering 1	0.232
	CRR073319	Tawny withering 2	0.180
	CRR073320	Tawny withering 3	0.573