Gene detail

Detail information of GWHGAAZE026126

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010660886.1	PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Vitis vinifera]
COG	YP_004196344.1	polyribonucleotide nucleotidyltransferase
Swissprot	tr\|Q9S7G6\|PNP2_ARATH	Polyribonucleotide nucleotidyltransferase 2, mitochondrial (Precursor)
trEMBL	tr\|B9GHS1\|B9GHS1_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE84847.2}
TAIR10	AT5G14580.1	polyribonucleotide nucleotidyltransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73836073	73845243	+
GWHAAZE00000007	mRNA	73836073	73845243	+
GWHAAZE00000007	exon	73836073	73836455	+
GWHAAZE00000007	exon	73837901	73838056	+
GWHAAZE00000007	exon	73838147	73838317	+
GWHAAZE00000007	exon	73838712	73838837	+
GWHAAZE00000007	exon	73838925	73839086	+
GWHAAZE00000007	exon	73839254	73839373	+
GWHAAZE00000007	exon	73839544	73839681	+
GWHAAZE00000007	exon	73839799	73839961	+
GWHAAZE00000007	exon	73840943	73841068	+
GWHAAZE00000007	exon	73841539	73841669	+
GWHAAZE00000007	exon	73842105	73842324	+
GWHAAZE00000007	exon	73842429	73842512	+
GWHAAZE00000007	exon	73843042	73843121	+
GWHAAZE00000007	exon	73843434	73843577	+
GWHAAZE00000007	exon	73844126	73844677	+
GWHAAZE00000007	exon	73845139	73845243	+
GWHAAZE00000007	five_prime_UTR	73836073	73836107	+
GWHAAZE00000007	CDS	73836108	73836455	+
GWHAAZE00000007	CDS	73837901	73838056	+
GWHAAZE00000007	CDS	73838147	73838317	+
GWHAAZE00000007	CDS	73838712	73838837	+
GWHAAZE00000007	CDS	73838925	73839086	+
GWHAAZE00000007	CDS	73839254	73839373	+
GWHAAZE00000007	CDS	73839544	73839681	+
GWHAAZE00000007	CDS	73839799	73839961	+
GWHAAZE00000007	CDS	73840943	73841068	+
GWHAAZE00000007	CDS	73841539	73841669	+
GWHAAZE00000007	CDS	73842105	73842324	+
GWHAAZE00000007	CDS	73842429	73842512	+
GWHAAZE00000007	CDS	73843042	73843121	+
GWHAAZE00000007	CDS	73843434	73843577	+
GWHAAZE00000007	CDS	73844126	73844677	+
GWHAAZE00000007	CDS	73845139	73845243	+

Transcript Sequence
>GWHTAAZE026160 TTTCTCTTTCAACACTGTCAACAATCACAACCAACATGGGATCAATGGTGAGGAGAACAAACCCTCTCATCTCAACTCTTCCTTACATTCTCACATGGAGAGGCCTCGGCTTTCGAACCATATGCAGCGGCCGTCTCGTCTTCGCACCATCCGTGTCTCCGTTGCCGTCACCGGCGGATTCTGAAATCTCCGGTGCCGGAAATATGGTCCACCAAACGTTTAGAGAAAGTTTTGAAATTGGAGAACGGGAAATTACCCTTGAAACCGGGAAGATTGCTAGGTTTGCGAATGGAGCGGTTGTTATAGGCATGGAAGAGACTAAAGTTCTATCCACCGTCGCGTCGGCTAAAGGCGATGCGGTTAAGGACTTCTTGCCACTTACTGTTGACTATCAAGAGAAACAGTTTGCTCAGGGTGTGATTCCAAACACATTCATGCGAAGGGAGGGTGCTCCAAAAGAACGTGAACTGTTGTGCGGTCGTCTCATTGATCGACCTATTCGACCACTCTTTCCTGCTGGATTTTACCATGAGGTCCAGGTCATGGCAAGTGTTCTCTCTTCCGATGGGAAACAAGATCCAGATGTAATGGCAGCTAATGCCACTTCCGCTGCTCTTATGTTATCAGATATCCCTTGGGGTGGCCCCATTGGAATGATACGTGTAGGAAGGATTTGTGGGAAATTTATTGTTAATCTAAGCATGGATGAGCTTAGCTTAAGTGATCTCAACCTGGTATACGCATGCACTAGAGATAAAACTTTGATGATAGATGTGCAAGCCCGTGAGATTTCGGAAAGAGATCTGGAAGCTGCACTAAGGCTTGCTCATCCCGAGGCTGTTAAATTTCTGGAGCCTCAACTCAGACTTGCAGCAAAAGCTGGTAAAGAAAAGAAGGAATATAAATTGTCTATGATATCAGATAAAACATTCGAAAAAGTCAAAAACTTGGCTGAAGCACCCATTGAAGCTATTTTCACAGATCCTGCATATGGGAAGTTTGAACGTGGAGAAGCCTTAGACAAGATTGCGCAAGATGTTAAAAGGGTGCTCGAGGAAGAATGCGACGAGGAAAGCTTAAAGGTCCTTTCAAAGACGGTTGACACAGTGAGGAAAGGGGTTGTTCGCAGAAGGATTATTAAAGAAGGACTTAGACTGGATGGAAGACAGCTTGATGAAGTTAGGCCTGTGTGTTGTGAAGCTGGTACACTACCTGTATTGCATGGATCGTCACTGTTTTCTCGTGGAGATACTCAGGTTCTTTGCACAGTTACACTTGGAGCACCTGGAGATGCTCAGCAATTGGAGTCCCTGGTTGGTCCTCCAACCAAGCGATTCATGCTTCATTACAGCTTTCCTCCATTTTCTATTAATGAAGTTGGTAAAAGAGTTGGTCTGAATAGGCGTGAAGTTGGGCATGGCACTCTTGCAGAGAAAGCCTTGCTCGCTGTTTTACCTTCTGAAGATGATTCTCCATATACTGTTCGGATCAATTCAGAAGTTATGGCCTCTGATGGTTCAACATCAATGGCAACTGTCTGTGGAGGTAGTATGGCCTTAATGGATGCTGGCATTCCTTTACGAAAACATGTAGCAGGTATATCAGTGGGCCTTGTTAGTGAAGTTGACCCATCAACTGGGACAATCAAGGATTATCGTATACTTACTGATATCTTGGGCCTAGAAGATCATCTGGGTGACATGGACTTCAAAATATCCGGCACACGAGATGGAGTAACAGCAATTCAGTTGGATATAAAGCCTGCTGGGATTCCACTTGATATTATTTGTGAGTGTTTAAAACCTGCACTCAGGGGTCGACTTCAAATCCTTGATCATATGGAGCGAGTAATAAATGCACCACGTACGCAGGATGACAGAAATTCTCCTCGGATAGTTACATTGAAGTACAGCAATGATGCAATTCGCCGCTTGATTGGTCCTCTTGGTGCCTTAAAGAGAAAAATTGAAGAAGAGACGGGAGCACGGATCTCTGTGAGCGACGGGACCATTACTATTGTTGCTAAGAATCAATCTGTAATGGAAAAAGTACTAGAGAAGATTGATTTTATAGTTGGTCGTGAGATTGAAATTGGAGGGGTCTACAAAGGAATTGTAACTTCGATAAAGGAATACGGTGCTTTTGTGGAGTTTAATGGTGGCCAACAAGGCCTCTTACATATTTCTGAAATGTCACACGAACCGGTAACCAAAGTTTCAGATGTGGTATCTATAGGGCAGCAAGTTTCATTAAAGTGCATAGAGCAAGATAACCGTGGTAACATTAAATTATCTCTTAAAGCCACTATTGCCCCACCAAGAACCAAGGCTAGTAATGTGGTTAAAAGATCTGTAGCTTCTAATGAACAAGAAAAACTACAATCTCTGGTTGAGGATATAGCAGTGGATGTAAACAAAGCTAGTGGGCCAATCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCACCATCAGCATTTCTAATCCGAAGCACTGCCGAGTGTGAGGAGGAGGAAAAATCTGCTGGTATAAATGTGAGTTCTAAAAGTAACCCTAGTGAGCCTCCAAGTGCTGCAAACTCTACTGCATCCACAATGTGTTCTCCTGGTGATTTGAATGATAAGGAAGCAAAAGTTGAGGGGCCCATTAGTGCGAAAAAGCTGAAGCTTGGAATGAAGGCAACGGCTAAAGTTCATCAAATCCGTGCACACGGTTTAGTCCTCGACTTAGGTGGTGGAGTTCGTGGGATGTATCGGTTTGAGGCTGGTGGGACAAAGGACTTTGAAATAGGTGATGAGGTGCAAGTCAGGTGCACAAGTTTCTCCACCAAAGGGATACCTGTAATGTCTATGGTGGAAGAAAATTAG

Network for GWHGAAZE026126

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	71	200	7.50E-19
PF03725.16	RNase_PH_C	203	265	7.70E-11
PF03726.15	PNPase	299	378	1.60E-15
PF01138.22	RNase_PH	381	514	8.70E-22
PF00013.30	KH_1	623	675	2.40E-05
PF00575.24	S1	684	755	1.20E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00962	pnp, PNPT1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0006402	biological_process	mRNA catabolic process
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding
GO:0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.000
	SRR3591706	second leaf	1.310
	SRR3591707	mature leaf	1.460
	SRR3591708	Shoot apex	5.058
	SRR3591709	Stem	3.307
	SRR3591710	White floral bud	2.874
	SRR3591711	White flower	7.210
	SRR3591712	Green floral bud	4.413
	SRR3591713	Yellow flower	4.349
SRP173429	SRR8316895	Juvenile bud stage	3.861
	SRR8316896	Juvenile bud stage	6.221
	SRR8316897	Juvenile bud stage	2.531
	SRR8316894	Third green stage	2.411
	SRR8316900	Third green stage	7.646
	SRR8316901	Third green stage	4.805
	SRR8316898	Complete white stage	0.881
	SRR8316899	Complete white stage	5.639
	SRR8316903	Complete white stage	2.135
	SRR8316902	Silver flowering stage	1.631
	SRR8316904	Silver flowering stage	2.047
	SRR8316905	Silver flowering stage	1.124
	SRR8316906	Gold flowering stage	4.496
	SRR8316907	Gold flowering stage	2.938
	SRR8316908	Gold flowering stage	3.607
SRP132670	SRR6706286	Control	4.662
	SRR6706287	Light intensity 50%	5.052
	SRR6706288	Light intensity 20%	5.295
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.283
	CNS0095593	Slightly white alabastrum(diploid) 2	3.237
	CNS0095594	Slightly white alabastrum(diploid) 3	2.957
	CNS0095595	Whole white alabastrum(diploid) 2	2.152
	CNS0095596	Whole white alabastrum(diploid) 3	2.466
	CNS0095597	Whole white alabastrum(diploid) 4	1.848
	CNS0095598	Silvery flower (diploied) 1	3.742
	CNS0095599	Silvery flower (diploied) 2	3.151
	CNS0095600	Silvery flower (diploied) 3	4.698
	CNS0095601	Golden flower (diploid) 1	3.281
	CNS0095602	Golden flower (diploid) 2	4.158
	CNS0095603	Golden flower (diploid) 3	4.209
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.511
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.246
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.023
	CNS0095610	Silvery flower (diploied) 1	5.477
	CNS0095611	Silvery flower (diploied) 2	5.567
	CNS0095612	Silvery flower (diploied) 3	2.718
	CNS0095613	Golden flower (tetraploid) 1	1.478
	CNS0095614	Golden flower (tetraploid) 2	4.407
	CNS0095615	Golden flower (tetraploid) 3	2.735
CRA001975	CRR073297	Stem 1	4.705
	CRR073298	Stem 2	5.011
	CRR073299	Stem 3	3.980
	CRR073300	Leaf 1	4.009
	CRR073301	Leaf 2	3.942
	CRR073302	Leaf 3	3.220
	CRR073303	Juvenile bud 1	3.584
	CRR073304	Juvenile bud 2	1.218
	CRR073305	Juvenile bud 3	3.627
	CRR073306	Third green 1	0.292
	CRR073307	Third green 2	0.298
	CRR073308	Third green 3	0.280
	CRR073309	Second white 1	1.071
	CRR073310	Second white 2	1.392
	CRR073311	Second white 3	1.692
	CRR073312	Silver flowering 1	1.356
	CRR073313	Silver flowering 2	1.936
	CRR073314	Silver flowering 3	0.823
	CRR073315	Gold flowering 1	1.195
	CRR073316	Gold flowering 2	3.818
	CRR073317	Gold flowering 3	1.656
	CRR073318	Tawny withering 1	2.640
	CRR073319	Tawny withering 2	2.059
	CRR073320	Tawny withering 3	2.884