Gene detail

Detail information of GWHGAAZE026127

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011101554.1	PREDICTED: probable methionine--tRNA ligase [Sesamum indicum]
COG	YP_003804586.1	methionyl-tRNA synthetase
Swissprot	tr\|Q9SVN5\|SYM_ARATH	Probable methionine--tRNA ligase
trEMBL	tr\|F6GWJ1\|F6GWJ1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44275.1}
TAIR10	AT4G13780.1	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73851969	73878159	+
GWHAAZE00000007	mRNA	73851969	73878159	+
GWHAAZE00000007	exon	73851969	73852180	+
GWHAAZE00000007	exon	73852664	73852808	+
GWHAAZE00000007	exon	73853694	73853847	+
GWHAAZE00000007	exon	73854010	73854165	+
GWHAAZE00000007	exon	73854510	73854740	+
GWHAAZE00000007	exon	73854852	73854995	+
GWHAAZE00000007	exon	73856291	73856381	+
GWHAAZE00000007	exon	73857267	73857373	+
GWHAAZE00000007	exon	73857480	73857594	+
GWHAAZE00000007	exon	73858150	73858286	+
GWHAAZE00000007	exon	73858395	73858460	+
GWHAAZE00000007	exon	73859372	73859500	+
GWHAAZE00000007	exon	73859630	73859770	+
GWHAAZE00000007	exon	73859895	73860015	+
GWHAAZE00000007	exon	73860970	73861205	+
GWHAAZE00000007	exon	73862590	73862691	+
GWHAAZE00000007	exon	73865526	73865712	+
GWHAAZE00000007	exon	73868881	73869108	+
GWHAAZE00000007	exon	73874500	73875785	+
GWHAAZE00000007	exon	73875921	73876233	+
GWHAAZE00000007	exon	73876367	73876770	+
GWHAAZE00000007	exon	73877620	73878159	+
GWHAAZE00000007	five_prime_UTR	73851969	73852044	+
GWHAAZE00000007	CDS	73852045	73852180	+
GWHAAZE00000007	CDS	73852664	73852808	+
GWHAAZE00000007	CDS	73853694	73853847	+
GWHAAZE00000007	CDS	73854010	73854165	+
GWHAAZE00000007	CDS	73854510	73854740	+
GWHAAZE00000007	CDS	73854852	73854995	+
GWHAAZE00000007	CDS	73856291	73856381	+
GWHAAZE00000007	CDS	73857267	73857373	+
GWHAAZE00000007	CDS	73857480	73857594	+
GWHAAZE00000007	CDS	73858150	73858286	+
GWHAAZE00000007	CDS	73858395	73858460	+
GWHAAZE00000007	CDS	73859372	73859500	+
GWHAAZE00000007	CDS	73859630	73859770	+
GWHAAZE00000007	CDS	73859895	73860015	+
GWHAAZE00000007	CDS	73860970	73861205	+
GWHAAZE00000007	CDS	73862590	73862691	+
GWHAAZE00000007	CDS	73865526	73865712	+
GWHAAZE00000007	CDS	73868881	73869108	+
GWHAAZE00000007	CDS	73874500	73875785	+
GWHAAZE00000007	CDS	73875921	73876233	+
GWHAAZE00000007	CDS	73876367	73876770	+
GWHAAZE00000007	CDS	73877620	73878159	+

Transcript Sequence
>GWHTAAZE026161 CTCTCCGATTTGAAACAAAACCCTAAATTTCACTCGTTCTCTTTCTCCGGTTGAAACAAAACCCTAAAATTCACTCATGGGAGATCTTTCGAGGGGCTCCGGCGATGATCGGAAACCCGTCAAACTTCCAATTCCAGGCAAAAGAAACATCCTCATCACTAGTGCTTTGCCTTACGTCAACAACGTCCCTCATCTCGGCAATATAATCGGCTGTGTATTGAGTGCTGATGTGTTTGCTCGGTACTGCCGGCTTCGCGCCTACAATGCAATATACATTTGTGGGACGGATGAGTATGGGACGGCCACGGAGACCAAGGCACTGGAAGAGAATTGTACTCCTAAGGAGATCTGTGATAAATATCATGCAATTCACAAGGAGGTCTATGAATGGTTTAATATCGGCTTTGATGAATTTGGACGCACGTCTACACCACAACAGACCGAAGTTTGCCAAGCAATTTTCAAGAAATTGTTGGAAAACAATTGGCTTTCTGAGAATACGATGCAGCAGCTTTATTGTGATACATGCAAAAGGTTCTTAGCTGACCGACTTGTGGAAGGTACCTGCCCTACACAAGGTTGTAATTATGATTCTGCACGAGGAGATCAATGTGAAAAGTGTGGGAAGCTTTTGAATCCGACAGAACTACAAGATCCTAAATGCAAGGTTTGTCAAAACACACCCCGGATCCGTGACACTAATCACTTGTTTCTCGAGCTCCCTTTACTGAAGGATAAGTTGGTTGAGTACATAAACAACACGTCAGTGGCTGGATCGTGGAGTCAGAATGCCATTCAAGCAACAAATGCATGGCTTAAAGAAGGACTGAGGCAACGGTGTATTACTAGAGATTTGAAGTGGGGGGTTCCTGTTCCACATGAAAATTTCAAGGACAAGGTTTTCTATGTTTGGTTTGATGCACCCATTGGATATGTCTCAATCACTTCATGCTACACACCCGAGTGGGAGAAGTGGTGGAAGAATCCTGAAAACGTGGAGCTGTATCAATTCATGGGAAAGGACAATGTGCCATTCCACACTGTTATGTTTCCGTCTACACTTCTTGGAACAGGTGAAAACTGGACTCTAATGAAGACTATTAGTGTTACTGAATACTTGAACTATGAAGCAGGGAAGTTCTCAAAGAGTAAAGGAGTAGGAGTTTTTGGAAATGATGCTAAAGATACCAATATTCCTGTAGAAGTATGGAGGTATTACTTGCTGACTAATAGACCAGAGGTATCAGATACGTTGTTTACATGGACAGACTTGCAAGCAAAGCTAAACAGCGAACTTCTAAATAATTTAGGGAACTTCATCAATCGAGTCTTGAGCTTTATTGCTAAAGATCCAGATTCGGGATCTGGTAAAGGCTCAGGATATTGTTCCATCATCCCTGATGCTCCTGGTGCAGAATCACATCTCCTGACAAAAGCATTGTGTAAAACAGTTGGCGATCATGTGGAGGATTATATTGGATACATGGAGAAGGTTAAGCTTAAGTCAGGATTGAAGACAGCAATGACAATTTCTGGGGAGGGAAATGCATATTTGCAAGAGAGTCAATTCTGGAAGCTTTACAAGGAAGACCAACCTTCCTGTTCTATAGTAATGAAAACATCAGCAGGACTAGTATATCTTCTTGCATGCCTTTTGGAACCTTTTATGCCATCATTTTCCCTCGAGGTACTCAAGCAGCTCAACTTGCCTGAAACACAAGTATCGCTTTCTGAAGAAAATGGAGATATTGAAAGGTCCAAAAGACCATGGGAATTTCTACCCGCCGGTCATAAAATCGGAACTCCAGTGCCACTGTTTAAAGAACTCAAAGATGAGGAAGTGGAATTCTTCCGCCAGAAGTTTGCTGGAAGTCAAGCTGATAGGATTGTCAAGGCGGAAGCTGAAGCGAAGAAGGTCACCGAACAATTAGTGAAAACAAAAGTGTCAGATGGAAGTGGAAAGAAAGAAAAATCGAAAAAATCTGCTGCTGAACCAAAGCCTAAGCCCGCAGCTGAAGCTGAAATTTCAATAAGTAGACTTGATATCCGTGTTGGTCTTATTACAAAGGTTGAGAAACATCCCGATGCTGATTCTTTATATGTGGAACAAATTGATGTGGGTGAAGGGCAACCTCGAATTGTTGTTAGTGGTCTCGTCAAATATATTCCTATAGAAGAAATGCAGAATCGGAAGGTCTGCGTTCTTTGCAACCTGAAGCCGGCAACCATGAGGGGTGTAAAATCACAAGCAATGGTTCTTGCTGCTTCTGATAGTGACAACACCAAGGTGGAATTGGTTGAACCGCCCCAATCGGCTCCTGTTGGAGAGAGACTAATTTTCCCCGGATTTGAAGGCAAGCCAGATGACGTTTTAAACCCTAAGAAGAAAGTTTGGGAAACGGTTCAACCGGATCTTCGCACCAACGAGGAATTGGTGGCCCTTTACAAGAATGTTCCATTCACCACCTCGGCTGAAATGGCTTTGGGTATAGCAATATTAAAGGAAGAGAACACAATTAAATCAGTAGAAGAAGTGAAAGTTGGAGTGGTACTTGATATGGAATCATGGGCTGGGAAAATGGGGTTGAGTTGCATATCTATGGCTCTTGAGGATTTTTATGCATCTCATGGTTACTACAACACTAGGTTGGTTTTGCACACTAGCGACTCTAATTGTAGTGTTGTTGGTGCAGCCACCGCAGCTTCAGACCTACTTAAAAATGAGCGAGTGCAGGCCATAATTGGACCAGTGACTTCTATGCAAGCCAATTTTGTAATCAATCTAGGTGACCACGCCCAAGTGCCCATTATTTCATTTTCTGCAACAAGCCCTTCACTCTCATCCCTAAGAAGTCGTTATTTTATTAGAGCTACCCCAAATGACTCATCTCAAGTAAAAGCCATTAGTGCCCTTATCCAAGCCTTTGGATGGAGGGCAGCTGTGCCCATTTATGCAGATACTGAGTTTGGAGAAGGGATTATACCTTTCTTGACCGATGCCTTGCAAGAAGTTGATGCCCACATACCTTACCGAAGTGCCATTCACCCTTTGGCCACTGACGATGAAATCACTGCAGAGCTTTACAAGTTACAAACGATGCAAACCAGAGTTTTCATTGTGCATATGCCACCTCCTCTTGCCTCTCGGGTTTTTACCATAGCGGAAGATGTTGAAATGATGATTGAAGGGTATGTTTGGATCTTAACTACTGGGATTACTAATCATTTGAGTTTGATTAACAATGCGCCCATTATTTCAATGCAAGGCATATTAGGTGTTAAGCCTCATGTTCCAAGAAGAAAGAGGCTTGAAGATTTCATTATTCGTTGGAGAAAGAAAGCCCAGCAAGATAAGATTGATTCTGATCTAACCATTTTTGGGCTTTGGGCATATGATGCTGCTACAGCACTCGCAATAGCAGTTGAAAGAGTTGTATTAATGAACAGGGAAACTTTAGTTGTCTCTCATATTGGCAAGGATCTTCCTCAAGCACTATCGGGTACTAAATTTCGTGGACTTGGAGGTGATTTCGATATTGTTAATAGCGAACTACAATCATCATCTTTTCAGATAGTTAATGTGATTGGTAATGTGGAGAGAGGTATTGGCTTTTGGATACCGGAGCTTGGAATCACAAAGAAATTGAATTTTTCAAACTCAAAGCTGATCAATTCTTGTAAGACCAATCTTAAAGCTATTATATGGCCAGGTGATACTGTATCCGTACCGAAAGGTTGGGTGATACCCTCAAACGGGAAGAAGTTGAGAATAGGAGTTCCAGTGAAGACTGGTGCTAATGCTTTCGTGAATGTGAAAAGAGATCCTCTCACTAATAGCACTACAGTCACTGGTTACTGCATAGATGTATTCCATGCTGTAATGGAAAAGTTGCCATATCATGTTCCATATGATTTCATTCCTTTTGCAGGTCCTAATGGCGAGACTGCAGGTACTTATGATGACTTGGTGTATCAAGTCTATATTGGGAACTATGATGCTGTGGTTGGTGATACTACTATTGTAGCCAACAGGTCTTTCTCCGTGGACTTTACACTACCATACTGTGAATCTGGAATATCATTGGTCGTGCCCATCAGAGACAAGGGGAGAAAAAATGCATGGGTTTTCTTGAAGCCATTGACTTGGGATCTTTGGTTGACAAGCATTTGTTTCTTTGTTTTCATTGCATTTGTGATTTTGATTCTTGAACACCAATCCAATGAAGAATTTGGTGGTTCTCGTAGACAACAATGTGGCACTGGCTTCTGGTTCTCATTTTCTACCTTGGTTTTTGCTCATAAGGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTGATCATATGGTGTTTTGTAGTTCTAATTCTGACGCAAAGTTACACGGCCAGCTTGACTTCGATGTTGACTGTTCAACAGCTTGAGCCGACTGTTACTGATGTACACGATCTTATAAGGAAAGGGGAGAATGTTGCATACCCAAAGGGCTCTTTTGTTTCGGCTTCCATTAAACAGTACAACATCCCGGAGTCAAAGCTTGTGGAATATGATACCTTAGATGAATTAGAGATGGACTTTTCCAAAGGAAGAGCAAATGGGGGTATTGCTGCTGTTATTGATGAAATACCTTATATGAAGCTATTTGTTGCAAGACATTGCTCAAAATATACCATGGTGCCAATACTAAAGAATGCTGGATTCGGCTTTGTATTCCCTATTGGTTCACCATTGGTATCTGATGTATCGAGAGCAATCTTGAATGTGACAGAAGGAGGTAAAATGGCAGAAATTGAGAATGCATGGTTTGGGCAAGATACACATTGCCCTGATATGAGCACTTCGGTGTCGTCAAATAGCCTTAGGCTCAATAGTTTTTGGGGACTGTTTCTCATTGTTGGAGCTTCTTCATCTTTTGCTCTCATAATATTCTTGTCTATGCTGTTCTATGAGCATAGAAACTTCTTGATGGTTAAATACTTCAAGAAGATCAAACAAGGGGAAGAGGGAGCGGTTAGTGGCTCCAATTCAAGCCGCTCAAGCTTTTCGGACCATTCCTCACCTACTACTAACTGCGTGCCTGTCCAAGCTAGCATTTGCATTGACAACGAAGGGGATATCATGCTGACCAAGTGCTACATTCATAATTCAGATGCGCAAAATAGCCAGGAGATATTTTCTGCTACTGAAATTGTTAGTCCAAATCAAGAGATACAGAGAGCTCACACAACAGAAGGTGACAGTAATTGA

Network for GWHGAAZE026127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09334.12	tRNA-synt_1g	25	419	8.80E-154
PF01588.21	tRNA_bind	657	752	7.60E-32
PF01094.29	ANF_receptor	839	1171	4.70E-64
PF00497.21	SBP_bac_3	1254	1578	7.00E-21
PF00060.27	Lig_chan	1357	1608	1.60E-34

Protein Sequence

>GWHPAAZE026145
MGDLSRGSGDDRKPVKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRAYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYEWFNIGFDEFGRTSTPQQTEVCQAIFKKLLENNWLSENTMQQLYCDTCKRFLADRLVEGTCPTQGCNYDSARGDQCEKCGKLLNPTELQDPKCKVCQNTPRIRDTNHLFLELPLLKDKLVEYINNTSVAGSWSQNAIQATNAWLKEGLRQRCITRDLKWGVPVPHENFKDKVFYVWFDAPIGYVSITSCYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWTDLQAKLNSELLNNLGNFINRVLSFIAKDPDSGSGKGSGYCSIIPDAPGAESHLLTKALCKTVGDHVEDYIGYMEKVKLKSGLKTAMTISGEGNAYLQESQFWKLYKEDQPSCSIVMKTSAGLVYLLACLLEPFMPSFSLEVLKQLNLPETQVSLSEENGDIERSKRPWEFLPAGHKIGTPVPLFKELKDEEVEFFRQKFAGSQADRIVKAEAEAKKVTEQLVKTKVSDGSGKKEKSKKSAAEPKPKPAAEAEISISRLDIRVGLITKVEKHPDADSLYVEQIDVGEGQPRIVVSGLVKYIPIEEMQNRKVCVLCNLKPATMRGVKSQAMVLAASDSDNTKVELVEPPQSAPVGERLIFPGFEGKPDDVLNPKKKVWETVQPDLRTNEELVALYKNVPFTTSAEMALGIAILKEENTIKSVEEVKVGVVLDMESWAGKMGLSCISMALEDFYASHGYYNTRLVLHTSDSNCSVVGAATAASDLLKNERVQAIIGPVTSMQANFVINLGDHAQVPIISFSATSPSLSSLRSRYFIRATPNDSSQVKAISALIQAFGWRAAVPIYADTEFGEGIIPFLTDALQEVDAHIPYRSAIHPLATDDEITAELYKLQTMQTRVFIVHMPPPLASRVFTIAEDVEMMIEGYVWILTTGITNHLSLINNAPIISMQGILGVKPHVPRRKRLEDFIIRWRKKAQQDKIDSDLTIFGLWAYDAATALAIAVERVVLMNRETLVVSHIGKDLPQALSGTKFRGLGGDFDIVNSELQSSSFQIVNVIGNVERGIGFWIPELGITKKLNFSNSKLINSCKTNLKAIIWPGDTVSVPKGWVIPSNGKKLRIGVPVKTGANAFVNVKRDPLTNSTTVTGYCIDVFHAVMEKLPYHVPYDFIPFAGPNGETAGTYDDLVYQVYIGNYDAVVGDTTIVANRSFSVDFTLPYCESGISLVVPIRDKGRKNAWVFLKPLTWDLWLTSICFFVFIAFVILILEHQSNEEFGGSRRQQCGTGFWFSFSTLVFAHKEKVVSNLGRFVVIIWCFVVLILTQSYTASLTSMLTVQQLEPTVTDVHDLIRKGENVAYPKGSFVSASIKQYNIPESKLVEYDTLDELEMDFSKGRANGGIAAVIDEIPYMKLFVARHCSKYTMVPILKNAGFGFVFPIGSPLVSDVSRAILNVTEGGKMAEIENAWFGQDTHCPDMSTSVSSNSLRLNSFWGLFLIVGASSSFALIIFLSMLFYEHRNFLMVKYFKKIKQGEEGAVSGSNSSRSSFSDHSSPTTNCVPVQASICIDNEGDIMLTKCYIHNSDAQNSQEIFSATEIVSPNQEIQRAHTTEGDSN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01874	MARS, metG	Metabolic pathways	map01100
		Selenocompound metabolism	map00450
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006431	biological_process	methionyl-tRNA aminoacylation
GO:0016020	cellular_component	membrane
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004825	molecular_function	methionine-tRNA ligase activity
GO:0015276	molecular_function	ligand-gated ion channel activity
GO:0000049	molecular_function	tRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.994
	SRR3591706	second leaf	17.797
	SRR3591707	mature leaf	15.621
	SRR3591708	Shoot apex	24.266
	SRR3591709	Stem	24.831
	SRR3591710	White floral bud	29.985
	SRR3591711	White flower	41.991
	SRR3591712	Green floral bud	37.096
	SRR3591713	Yellow flower	47.695
SRP173429	SRR8316895	Juvenile bud stage	17.684
	SRR8316896	Juvenile bud stage	26.138
	SRR8316897	Juvenile bud stage	12.148
	SRR8316894	Third green stage	11.828
	SRR8316900	Third green stage	31.659
	SRR8316901	Third green stage	28.867
	SRR8316898	Complete white stage	11.272
	SRR8316899	Complete white stage	33.855
	SRR8316903	Complete white stage	19.934
	SRR8316902	Silver flowering stage	12.699
	SRR8316904	Silver flowering stage	19.859
	SRR8316905	Silver flowering stage	8.691
	SRR8316906	Gold flowering stage	33.089
	SRR8316907	Gold flowering stage	31.930
	SRR8316908	Gold flowering stage	34.669
SRP132670	SRR6706286	Control	19.411
	SRR6706287	Light intensity 50%	21.465
	SRR6706288	Light intensity 20%	22.616
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.381
	CNS0095593	Slightly white alabastrum(diploid) 2	15.414
	CNS0095594	Slightly white alabastrum(diploid) 3	16.024
	CNS0095595	Whole white alabastrum(diploid) 2	15.059
	CNS0095596	Whole white alabastrum(diploid) 3	14.114
	CNS0095597	Whole white alabastrum(diploid) 4	13.008
	CNS0095598	Silvery flower (diploied) 1	17.265
	CNS0095599	Silvery flower (diploied) 2	14.041
	CNS0095600	Silvery flower (diploied) 3	36.982
	CNS0095601	Golden flower (diploid) 1	17.139
	CNS0095602	Golden flower (diploid) 2	43.958
	CNS0095603	Golden flower (diploid) 3	42.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.811
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.820
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.916
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.867
	CNS0095610	Silvery flower (diploied) 1	38.538
	CNS0095611	Silvery flower (diploied) 2	41.079
	CNS0095612	Silvery flower (diploied) 3	30.877
	CNS0095613	Golden flower (tetraploid) 1	25.532
	CNS0095614	Golden flower (tetraploid) 2	44.694
	CNS0095615	Golden flower (tetraploid) 3	53.322
CRA001975	CRR073297	Stem 1	24.224
	CRR073298	Stem 2	22.631
	CRR073299	Stem 3	23.698
	CRR073300	Leaf 1	29.514
	CRR073301	Leaf 2	22.918
	CRR073302	Leaf 3	23.624
	CRR073303	Juvenile bud 1	25.023
	CRR073304	Juvenile bud 2	21.358
	CRR073305	Juvenile bud 3	28.813
	CRR073306	Third green 1	8.028
	CRR073307	Third green 2	8.061
	CRR073308	Third green 3	10.790
	CRR073309	Second white 1	14.893
	CRR073310	Second white 2	16.629
	CRR073311	Second white 3	19.710
	CRR073312	Silver flowering 1	20.657
	CRR073313	Silver flowering 2	22.023
	CRR073314	Silver flowering 3	21.134
	CRR073315	Gold flowering 1	9.041
	CRR073316	Gold flowering 2	15.050
	CRR073317	Gold flowering 3	11.305
	CRR073318	Tawny withering 1	19.073
	CRR073319	Tawny withering 2	16.275
	CRR073320	Tawny withering 3	19.367