Gene detail

Detail information of GWHGAAZE026128

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006342451.1	1.2944E-164	PREDICTED: peroxidase 46-like [Solanum tuberosum]
Swissprot	tr\|Q9SK52\|PER18_ARATH	3E-144	Peroxidase 18 (Precursor)
trEMBL	tr\|V4UH01\|V4UH01_9ROSI	5E-164	Uncharacterized protein {ECO:0000313\|EMBL:ESR63480.1}
TAIR10	AT2G24800.1	5E-116	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73879501	73885898	-
GWHAAZE00000007	mRNA	73879501	73885898	-
GWHAAZE00000007	exon	73879501	73879913	-
GWHAAZE00000007	exon	73882751	73882916	-
GWHAAZE00000007	exon	73884565	73884744	-
GWHAAZE00000007	exon	73885728	73885898	-
GWHAAZE00000007	CDS	73885728	73885898	-
GWHAAZE00000007	CDS	73884565	73884744	-
GWHAAZE00000007	CDS	73882751	73882916	-
GWHAAZE00000007	CDS	73879501	73879913	-

Transcript Sequence
>GWHTAAZE026162 ATGGTAATGTCTTCTCCTTGTCGCTGCAGCAGCTTATCATTTGATTTCTATGGGCTGACATGCCCATCTGCAGAATTGATTGTAAAAAACACAGTCCGATCAGCTTCTTCTTCGGACACAACACTCCCCGGAAAGCTTCTTCGCTTGCTTTTCCATGATTGCTTTGTTGAGGGTTGTGATGCGTCTGTGCTGCTGCAAGGCAACGGTTCAGAGCGAAGTGACCCTGCCAACACATCTTTAGGAGGATTTTCAGTAATAAATTCGGCTAAAAGATTGCTTGAAATCTTGTGCCCATCAACTGTTTCCTGTGCTGATATTCTTGCTTTGGCTGCCCGAGATGCTGTTGAATTTACCGGTGGACCAGCAATTCCAATTCCAACGGGGAGGAGAGATGGAAGGAACTCAACAGCTTCAAATGTGAGAACAAATATAATAGACACAAGTTTTACACTAAATGAGATGATTAAGATCTTCAATGCAAAAGGACTTTCTCTACATGACCTTGTTACCCTCTCTGGAGCTCACACAATAGGCTCAGCACACTGCAATGCATTCAGTGAGCGCTTTCACCTCAACACAAAGGGAGGATTCACACTAATTGATGCTTCCTTAGACAAAAACTATGCAGCTCAGCTCACCCAGCAGTGTCCAGCCGGAGCAAGTGCCTCGAAAACCGTGAACAATGACCCCGAGACTCCTCTTGTTTTTGACAACCAATATTACAGGGAGATATTAGCCCACAAGGGTCTGTTTCAGTCCGACTCAGCTCTGCTCAATGACGAAAGAACAATGAACAAAGTTGTGGCATTTTCAAATGACCAAAATAGCTTCTTTGTGAACTGGGCTGAATCTTTTGTGAGGCTGGCTAGTGTTGGTGTGAAGACGGGTGATGAAGGAGAGATTAGAGTGTCTTGTGAAGTCATTAATTAA

Network for GWHGAAZE026128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	28	273	1.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.127
	SRR3591706	second leaf	4.699
	SRR3591707	mature leaf	0.318
	SRR3591708	Shoot apex	14.247
	SRR3591709	Stem	0.334
	SRR3591710	White floral bud	0.908
	SRR3591711	White flower	0.730
	SRR3591712	Green floral bud	1.165
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.303
	SRR8316896	Juvenile bud stage	7.070
	SRR8316897	Juvenile bud stage	2.319
	SRR8316894	Third green stage	1.026
	SRR8316900	Third green stage	1.198
	SRR8316901	Third green stage	1.348
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.009
	SRR8316903	Complete white stage	0.411
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.117
	SRR8316905	Silver flowering stage	0.195
	SRR8316906	Gold flowering stage	0.043
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.287
	SRR6706287	Light intensity 50%	1.979
	SRR6706288	Light intensity 20%	2.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.804
	CNS0095593	Slightly white alabastrum(diploid) 2	2.797
	CNS0095594	Slightly white alabastrum(diploid) 3	2.050
	CNS0095595	Whole white alabastrum(diploid) 2	2.502
	CNS0095596	Whole white alabastrum(diploid) 3	0.463
	CNS0095597	Whole white alabastrum(diploid) 4	1.653
	CNS0095598	Silvery flower (diploied) 1	2.849
	CNS0095599	Silvery flower (diploied) 2	1.402
	CNS0095600	Silvery flower (diploied) 3	0.706
	CNS0095601	Golden flower (diploid) 1	1.372
	CNS0095602	Golden flower (diploid) 2	1.440
	CNS0095603	Golden flower (diploid) 3	0.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.024
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.664
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.239
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.136
	CNS0095610	Silvery flower (diploied) 1	0.004
	CNS0095611	Silvery flower (diploied) 2	0.478
	CNS0095612	Silvery flower (diploied) 3	0.266
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.066
	CNS0095615	Golden flower (tetraploid) 3	0.071
CRA001975	CRR073297	Stem 1	10.551
	CRR073298	Stem 2	8.162
	CRR073299	Stem 3	8.720
	CRR073300	Leaf 1	1.278
	CRR073301	Leaf 2	2.209
	CRR073302	Leaf 3	1.310
	CRR073303	Juvenile bud 1	0.499
	CRR073304	Juvenile bud 2	1.235
	CRR073305	Juvenile bud 3	0.629
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.042
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.409
	CRR073316	Gold flowering 2	1.831
	CRR073317	Gold flowering 3	1.048
	CRR073318	Tawny withering 1	0.162
	CRR073319	Tawny withering 2	0.245
	CRR073320	Tawny withering 3	0.282