Gene detail

Detail information of GWHGAAZE026223

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10759.1	8.4816E-146	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GX84\|C3H1_ARATH	9E-136	Zinc finger CCCH domain-containing protein 1
trEMBL	tr\|A0A068UR94\|A0A068UR94_COFCA	3E-146	Coffea canephora DH200=94 genomic scaffold, scaffold_47 {ECO:0000313\|EMBL:CDP10759.1}
TAIR10	AT1G01350.1	1E-93	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	69595	70827	-
GWHAAZE00000008	mRNA	69595	70827	-
GWHAAZE00000008	exon	69595	69708	-
GWHAAZE00000008	exon	69857	70692	-
GWHAAZE00000008	exon	70779	70827	-
GWHAAZE00000008	CDS	70779	70827	-
GWHAAZE00000008	CDS	69857	70692	-
GWHAAZE00000008	CDS	69595	69708	-

Transcript Sequence
>GWHTAAZE026257 ATGGCGGATTCAAGTGATCAACCGCAAGCTGAACCACAATCCGAACCTGTATGCAGCTTTTTTCGAAAACCGTCGAAGAACAGAAACATTAGGAAGCGAACTATTGATGAAAATGAAACCACCGAAGAAGATTCTAAATCCGAGACCTCGATTATACCTAATAAGAAGAAACCCCCAATTCACGACAATAAACTACACTTCTCTACTGGACCTTCAAAGCAATCGACGAATTCTGAATCTGAGCCTGTTGAATCGAAAACCACAATGTTTCAATTTGAGTCATCAAAGGAAATTCAAGTCCAGAATGATAGCAAGGCAACTGCAACCCTTGAGACCGAGACAGATTTTTCAAGAGATTCTCGGGCGATTAGAGAGAGAGTTCTTAAGCAGGCAGAGGAAGCTTTGAAGGGGAAGAAAAAGGGTGATGGGGATGAAAAATTGTACAAGGGGATTCACGGGTATACTGATTACAAGGCTGGGTTTACGGAGAGCATCGGTTTCTGGCGAGAAGCGAGACACGGGCGCGGGCCTCTTAGGGCTTCAGCCCATATTAGAGTGTCAGCAAGGTTCGATTATCAGCCGGATATCTGTAAGGATTACAAAGAGACCGGATATTGTGGGTATGGGGATGCGTGTAAGTTTATGCACGATCGAGGGGATTACAAGCCCGGGTGGCAGTTGGAGAAGGAGTGGGAAGAAGCAGAGAAAGTAAGGAAGAGAAACTTGGCTATGGGACTTCTTGATGATGATGAGGAGGAGGGTGCAGTGCAGAGTGATGAAGATGATGATGCGTTGCCATTCGCGTGTTTCATTTGTAGGCAGCCTTTTGTGGATGCTGTTGTCACTAAGTGCAAACACTACTTCTGTGAGCATTGCGCTTTAAAAGTAAGGCATCAATCTGGACCAGGGTCTGGGCAAGGGCTTAGCCTGCAAAAGTGGATGAACAAATGCCCAGTTTGGATTGGCTTCCTTGAATGGATTCCGAAACCCCTGTTTTAG

Network for GWHGAAZE026223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	192	217	6.70E-10
PF00097.26	zf-C3HC4	269	299	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.931
	SRR3591706	second leaf	6.704
	SRR3591707	mature leaf	10.473
	SRR3591708	Shoot apex	7.552
	SRR3591709	Stem	10.095
	SRR3591710	White floral bud	11.721
	SRR3591711	White flower	15.912
	SRR3591712	Green floral bud	9.874
	SRR3591713	Yellow flower	11.483
SRP173429	SRR8316895	Juvenile bud stage	3.902
	SRR8316896	Juvenile bud stage	4.368
	SRR8316897	Juvenile bud stage	1.850
	SRR8316894	Third green stage	1.874
	SRR8316900	Third green stage	5.331
	SRR8316901	Third green stage	5.638
	SRR8316898	Complete white stage	2.730
	SRR8316899	Complete white stage	9.680
	SRR8316903	Complete white stage	6.361
	SRR8316902	Silver flowering stage	3.698
	SRR8316904	Silver flowering stage	5.054
	SRR8316905	Silver flowering stage	2.463
	SRR8316906	Gold flowering stage	7.191
	SRR8316907	Gold flowering stage	5.202
	SRR8316908	Gold flowering stage	4.789
SRP132670	SRR6706286	Control	3.899
	SRR6706287	Light intensity 50%	2.988
	SRR6706288	Light intensity 20%	3.375
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.467
	CNS0095593	Slightly white alabastrum(diploid) 2	3.298
	CNS0095594	Slightly white alabastrum(diploid) 3	3.302
	CNS0095595	Whole white alabastrum(diploid) 2	2.221
	CNS0095596	Whole white alabastrum(diploid) 3	2.656
	CNS0095597	Whole white alabastrum(diploid) 4	2.628
	CNS0095598	Silvery flower (diploied) 1	4.617
	CNS0095599	Silvery flower (diploied) 2	4.486
	CNS0095600	Silvery flower (diploied) 3	8.444
	CNS0095601	Golden flower (diploid) 1	3.966
	CNS0095602	Golden flower (diploid) 2	7.169
	CNS0095603	Golden flower (diploid) 3	7.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.991
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.627
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.110
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.895
	CNS0095610	Silvery flower (diploied) 1	6.952
	CNS0095611	Silvery flower (diploied) 2	4.033
	CNS0095612	Silvery flower (diploied) 3	4.593
	CNS0095613	Golden flower (tetraploid) 1	5.765
	CNS0095614	Golden flower (tetraploid) 2	6.807
	CNS0095615	Golden flower (tetraploid) 3	6.186
CRA001975	CRR073297	Stem 1	5.219
	CRR073298	Stem 2	3.683
	CRR073299	Stem 3	3.799
	CRR073300	Leaf 1	5.050
	CRR073301	Leaf 2	3.021
	CRR073302	Leaf 3	3.528
	CRR073303	Juvenile bud 1	3.080
	CRR073304	Juvenile bud 2	4.603
	CRR073305	Juvenile bud 3	5.719
	CRR073306	Third green 1	4.773
	CRR073307	Third green 2	5.383
	CRR073308	Third green 3	4.685
	CRR073309	Second white 1	8.058
	CRR073310	Second white 2	6.249
	CRR073311	Second white 3	6.510
	CRR073312	Silver flowering 1	5.883
	CRR073313	Silver flowering 2	3.698
	CRR073314	Silver flowering 3	4.322
	CRR073315	Gold flowering 1	2.283
	CRR073316	Gold flowering 2	8.321
	CRR073317	Gold flowering 3	4.301
	CRR073318	Tawny withering 1	4.148
	CRR073319	Tawny withering 2	4.583
	CRR073320	Tawny withering 3	4.738