Detail information of GWHGAAZE026249


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO66849.14.0879E-136hypothetical protein CISIN_1g020099mg [Citrus sinensis]
COGYP_002248350.19E-76anthranilate synthase component I
Swissprottr|Q9XJ29|ASA2_ORYSJ2E-131Anthranilate synthase alpha subunit 2, chloroplastic (Precursor)
trEMBLtr|A0A067FL45|A0A067FL45_CITSI2E-136Uncharacterized protein {ECO:0000313|EMBL:KDO66850.1}
TAIR10AT3G55870.14E-102ADC synthase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene12723281274767+
GWHAAZE00000008mRNA12723281274767+
GWHAAZE00000008exon12723281272573+
GWHAAZE00000008exon12726741272730+
GWHAAZE00000008exon12728101272962+
GWHAAZE00000008exon12731491273229+
GWHAAZE00000008exon12744801274767+
GWHAAZE00000008CDS12723281272573+
GWHAAZE00000008CDS12726741272730+
GWHAAZE00000008CDS12728101272962+
GWHAAZE00000008CDS12731491273229+
GWHAAZE00000008CDS12744801274767+
Transcript Sequence

Network for GWHGAAZE026249

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00425.19Chorismate_bind271821.70E-48
PF00425.19Chorismate_bind1812653.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01657trpE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Phenazine biosynthesismap00405
Quorum sensingmap02024
Biofilm formation - Pseudomonas aeruginosamap02025

Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.297
SRR3591706second leaf8.871
SRR3591707mature leaf4.408
SRR3591708Shoot apex15.134
SRR3591709Stem1.604
SRR3591710White floral bud6.764
SRR3591711White flower1.718
SRR3591712Green floral bud20.629
SRR3591713Yellow flower1.089
SRP173429 SRR8316895Juvenile bud stage 6.911
SRR8316896Juvenile bud stage 10.387
SRR8316897Juvenile bud stage 2.904
SRR8316894Third green stage 4.767
SRR8316900Third green stage 15.660
SRR8316901Third green stage 16.848
SRR8316898Complete white stage 1.217
SRR8316899Complete white stage 16.034
SRR8316903Complete white stage 3.485
SRR8316902Silver flowering stage0.159
SRR8316904Silver flowering stage0.778
SRR8316905Silver flowering stage0.396
SRR8316906Gold flowering stage 0.906
SRR8316907Gold flowering stage 0.175
SRR8316908Gold flowering stage 0.576
SRP132670SRR6706286Control1.078
SRR6706287Light intensity 50%0.914
SRR6706288Light intensity 20%1.490
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.928
CNS0095593Slightly white alabastrum(diploid) 21.962
CNS0095594Slightly white alabastrum(diploid) 33.898
CNS0095595Whole white alabastrum(diploid) 21.943
CNS0095596Whole white alabastrum(diploid) 33.389
CNS0095597Whole white alabastrum(diploid) 42.494
CNS0095598Silvery flower (diploied) 10.533
CNS0095599Silvery flower (diploied) 22.230
CNS0095600Silvery flower (diploied) 31.850
CNS0095601Golden flower (diploid) 10.533
CNS0095602Golden flower (diploid) 20.941
CNS0095603Golden flower (diploid) 31.891
CNS0095604Slightly white alabastrum(tetraploid) 15.758
CNS0095605Slightly white alabastrum(tetraploid) 24.960
CNS0095606Slightly white alabastrum(tetraploid) 311.375
CNS0095607Whole white alabastrum(tetraploid) 11.079
CNS0095608Whole white alabastrum(tetraploid) 21.531
CNS0095609Whole white alabastrum(tetraploid) 313.288
CNS0095610Silvery flower (diploied) 10.352
CNS0095611Silvery flower (diploied) 20.735
CNS0095612Silvery flower (diploied) 30.277
CNS0095613Golden flower (tetraploid) 10.325
CNS0095614Golden flower (tetraploid) 20.817
CNS0095615Golden flower (tetraploid) 30.332
CRA001975CRR073297Stem 12.842
CRR073298Stem 23.655
CRR073299Stem 32.991
CRR073300Leaf 14.450
CRR073301Leaf 22.340
CRR073302Leaf 31.897
CRR073303Juvenile bud 11.728
CRR073304Juvenile bud 22.185
CRR073305Juvenile bud 31.691
CRR073306Third green 10.000
CRR073307Third green 20.112
CRR073308Third green 30.000
CRR073309Second white 10.023
CRR073310Second white 20.068
CRR073311Second white 30.000
CRR073312Silver flowering 10.057
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.006
CRR073315Gold flowering 10.392
CRR073316Gold flowering 20.872
CRR073317Gold flowering 30.417
CRR073318Tawny withering 10.654
CRR073319Tawny withering 20.251
CRR073320Tawny withering 30.000