Gene detail

Detail information of GWHGAAZE026401

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662396.1	0	PREDICTED: probable serine/threonine protein kinase IRE [Vitis vinifera]
COG	YP_003112167.1	7E-27	serine/threonine protein kinase
Swissprot	tr\|Q9LE81\|IRE_ARATH	0	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|F6HAR9\|F6HAR9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49293.1}
TAIR10	AT5G62310.1	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3972052	3992289	+
GWHAAZE00000008	mRNA	3972052	3992289	+
GWHAAZE00000008	exon	3972052	3972469	+
GWHAAZE00000008	exon	3973630	3973694	+
GWHAAZE00000008	exon	3973787	3973963	+
GWHAAZE00000008	exon	3974066	3975409	+
GWHAAZE00000008	exon	3976413	3976585	+
GWHAAZE00000008	exon	3977001	3977250	+
GWHAAZE00000008	exon	3980442	3980534	+
GWHAAZE00000008	exon	3980623	3980763	+
GWHAAZE00000008	exon	3981211	3981303	+
GWHAAZE00000008	exon	3981878	3982076	+
GWHAAZE00000008	exon	3983370	3983491	+
GWHAAZE00000008	exon	3985085	3985173	+
GWHAAZE00000008	exon	3987644	3987695	+
GWHAAZE00000008	exon	3987780	3987836	+
GWHAAZE00000008	exon	3987943	3988113	+
GWHAAZE00000008	exon	3991676	3991756	+
GWHAAZE00000008	exon	3992130	3992289	+
GWHAAZE00000008	CDS	3972052	3972469	+
GWHAAZE00000008	CDS	3973630	3973694	+
GWHAAZE00000008	CDS	3973787	3973963	+
GWHAAZE00000008	CDS	3974066	3975409	+
GWHAAZE00000008	CDS	3976413	3976585	+
GWHAAZE00000008	CDS	3977001	3977250	+
GWHAAZE00000008	CDS	3980442	3980534	+
GWHAAZE00000008	CDS	3980623	3980763	+
GWHAAZE00000008	CDS	3981211	3981303	+
GWHAAZE00000008	CDS	3981878	3982076	+
GWHAAZE00000008	CDS	3983370	3983491	+
GWHAAZE00000008	CDS	3985085	3985173	+
GWHAAZE00000008	CDS	3987644	3987695	+
GWHAAZE00000008	CDS	3987780	3987836	+
GWHAAZE00000008	CDS	3987943	3988113	+
GWHAAZE00000008	CDS	3991676	3991756	+
GWHAAZE00000008	CDS	3992130	3992219	+
GWHAAZE00000008	three_prime_UTR	3992220	3992289	+

Transcript Sequence
>GWHTAAZE026435 ATGTCGAGTCCCCCAAATTCACCGGAGAATCTCGAACCCGACCAAAATCCGTCAACCTCATCCGGCGAGAGCGAACAGCAGCAACGGACGCCGTCCATCGTGAAACTGAGGAAAATCCCTCCGATTCCGGTGCGTCAGAGCCTCAGTAGAGCCGAATCCGCCGAGATCACGTACGAGAGCAGCGAAGACGATGGCGTTAATGGCGATGAGACTGAATCTGATCCGTTCATGATGCAGGCTTCGGCTCTAGGTCTCAATCACATCCGTACTCGATCGGCTCCTTCGCATGCGCTTCTTAGGTTTTTGAATTCCACGTCATCTAAGCCTTCGAATCTCGGTGCTAGTGATGCTAATAAGGGGAAAGATGGATTTGATTATCTCTCCAAAGCTCCTCTTCCTCCAAATTCTACAGAGCAAGGAAAAAAACTATGGAGTCAATCTAAATCCTTACGACTCCCATCATCACTCAATCCGGGGTGGGAGGGTCATCATGCAACTTTTGCAAAGGAAATGCAATCTCCACGGTTCCAGGCCATAATACGTGTTACTAGCGGTCGCAAAAAGAAAGCTCCAGATATTAAGAGTTTCTCGCATGAACTCAATTCCAAAGGAGTTAGACCACTTCCATTCTGGAAATCTCGTGCATTTGGGCGCATGGAGGAGGTTATGATGATGCTCAGGGAAAAGTTTGAAAAGTTAAAGGAAGAAGTCAGCTCTGATTTAGGTATCTTTGCTGGTGATTTGGTGGGTATACTTGAAAAAACTTCAGAATCTCACCCAGAATGGAAAGAGAGCTTGGAGGATTTGTTGGTAATAGCTAGCCAGTGTGCAAAAATGCCACCTAATGATTTTTGGGCAAAGTGTGAATTCATTGTTCAAAATCTTGATGACCGCCGCCAAGAGCTACCCATGGGTACCTTGAAACAAGTCCACACCCGCCTTTTATTTATACTCACTAGATGCACTCGGCTTGTGCAGTTTCACAAGGAGTGCTGTTATGAAGACGATCCCACTCTGGGTTTTCACCAACTCAGTGACCTTGGACCCCATAATGACAAAATTCTTAGTCCTCAATTTCAGGACTTCAGTTCATTGTCTGGGAAGGAACCAAGTGAGAGAATAAATAAGAAGGCCCATGGGCGGGAGCAAAGTAATCTGGGTATTAAACAAGACCAAGTAAATCAAAACTTAGGTAGTGAGGTTGACAATGAGGAGATTAGTGCCGGTAAAACTGTTTCTTCATCTACAAGCAATTACAAGATGTCATCTTGGAAGAAACTTCCATGCGCACCTGAAAAGAACCGGAAACGTGTCGATACCATTGACACCACTTCCAAGATTAGTAAAGAGGAAACGACCATGGTATTTGAAAACGTTGAGAATTTATATGCCCCATCATGCCCTCCTGAACATTCAGAGGCATCGCTGAAAGTACAAAAGGTTGCGTGGAGAGTTTGGGGCGATCGGCAAAATGTATCATATGAGAATTCGTTGATATGCCGTATTTGCGAGGTTGAAATACCCACTGTATATGTAGAAGAGCACTCCAGAATTTGTACAATTGCTGATAGATGCGATTTAAAAGGTCTAACTGTAAATGAACGATTTGATAGAGTTTCAGAAACCCTTGAAAAGATACTCGAATCTTGGACACCAAAAAGCACAGATACTGTAGTAGGAAGTCCCGAGGTTGTTGGAGTGTCTACCACTAGTATACCTGAAGAGTTGGACGAGTTGCCACCTAAGCGACACTCCCGTCGGTGCTCTGAAGACATGCTAGAATGTATTCCGGAAGCTGCTAATGCATTTGTTATGGACGATCTCAACATTTTGCATGATGTGTCATGTGAGCCGCGTGGCATTTCGACACCTGATCTTGGTAAGCGAGCCTCATCGGGGGGAAGCTTGACGCCTCGATCGCCTTTATTAACCCCACGGACGAATCAGATTGAATTGCTACTGAGTGGAAGGAGAACCATATCTGAGCATGAAAATTATCAGCAGATTAGTAAGCTATTGGATATAGCTCGATCTATAGCCAATGTAAACACTAATGAGTATAGTGCATTGGAGTTTATGCTTGATCGTCTCGAAGAGCTAAAGTATGCCATTCAAGATAGGAAGGTTGATGCCCTTGTTGTTGAAACTTTTGGGAGACGTATAGAGAAACTTCTGCAGGAGAAGTATGTACTTCTTTGTGGGCAGATAGAAGATGAGAAGTTAGAATCGTCAAATACTATGGCTGATGAAGAGAGTTCAGTTGAGGATGACACACATCGTAGTTTGCGCGCAAGCCCTATTAATCCATGTTCCAAGGACAGAACCTCTATTGAAGATTTTGAAATAATAAAACCAATCAGCAGAGGTGCTTTTGGACGAGTTTTCTTGGCCAGGAAAACAGCGACTGGTGACTTATTTGCTATTAAGGTTTTAAAAAAGGCTGATATGATTCGTAAAAATGCAGTTGAAAGCATTTTGGCTGAGCGTGATATCCTAATATCGGTTCGCAATCCATTTGTAGTCCGATTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATTTGGTCATGGAATACTTAAATGGAGGAGATCTTTTCTCTTTGCTGAGAAATCTTGGCTGCTTGGAAGAAGATATGGCACGTGTATATGTTGCGGAACTTGTTCTTGCTTTGGAATATTTGCATTCTTTAAATGTCATTCATAGAGACTTGAAGCCAGACAACTTATTGATAGGCCCAGATGGTCACATCAAGTTGACAGATTTCGGGCTCTCCAAGGTAGGTCTAATCAATAGCACAGATGACTTATCGGCTCAATCAGTAAACAGTACATCTTTTCTTCAACGCGATGAACCAAAAGAGGCATCTTTGAAAAGAGAACATCGCCAAAAGCATTCAGTTGTTGGCACCCCTGACTACTTGGCACCCGAGATACTTCTCGGCATGGGACATGGTGCCACAGCGGATTGGTGGTCTGTTGGTGTTATTCTTTTTGAACTCCTTGTAGGAATCCCGCCTTTTAATGCAGCACATCCACAGGTAGGCCATCTGAAATTTGCAGTCACTTTCATCTTGCAAATTTTTAACAATATTATGAACAGGGACATACCCTGGCCCAAAGTACCTGAGGAAATGAGCTATGAAGCACATGATTTAATCAACAAGTTGCTGATGGAAAATCCAGTCCAACGATTAGGTGCGACGGGGGCTAGAGAGGTAAAAAGGCATGCTTTTTTTAATGGGATCAACTGGGACACACTTGCAAGGCAGAAGGCTGCGTTCATACCATCGACTGAAACTCTTGACACTAGTTATTTTATGAGCCGGTACATTTGGAATCCCGAAGATGAACATGTCCATGGAGCTAGTGACTTTGACGACATGACTGACACATCTAGCGTCTCTTGCAGCAGCAGTTCTTACAGCGTTGTACAAGATGAAGATGCAGACGAATGTGGTAATTTGGCGGACTTCAGTACTCCAACCCACAATGTGAAGTACTCGTTCAGTAATTTCTCGTTTAAGAACTTGTCTCAACTGGCTTCTATCAATTATGATTTACTTGTAAAGAGTTCTAAAGAATCAGTAGAAGCTTCAAAACCAGAAGTTCCTTGATCAAAAATCTGCTGTTCCTTCTGCAAAAACAAGCACTCAAAATTCTAAATCACGGAAAGAGGCTGGCCCG

Network for GWHGAAZE026401

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	780	1079	2.00E-63

Protein Sequence

>GWHPAAZE026419
MSSPPNSPENLEPDQNPSTSSGESEQQQRTPSIVKLRKIPPIPVRQSLSRAESAEITYESSEDDGVNGDETESDPFMMQASALGLNHIRTRSAPSHALLRFLNSTSSKPSNLGASDANKGKDGFDYLSKAPLPPNSTEQGKKLWSQSKSLRLPSSLNPGWEGHHATFAKEMQSPRFQAIIRVTSGRKKKAPDIKSFSHELNSKGVRPLPFWKSRAFGRMEEVMMMLREKFEKLKEEVSSDLGIFAGDLVGILEKTSESHPEWKESLEDLLVIASQCAKMPPNDFWAKCEFIVQNLDDRRQELPMGTLKQVHTRLLFILTRCTRLVQFHKECCYEDDPTLGFHQLSDLGPHNDKILSPQFQDFSSLSGKEPSERINKKAHGREQSNLGIKQDQVNQNLGSEVDNEEISAGKTVSSSTSNYKMSSWKKLPCAPEKNRKRVDTIDTTSKISKEETTMVFENVENLYAPSCPPEHSEASLKVQKVAWRVWGDRQNVSYENSLICRICEVEIPTVYVEEHSRICTIADRCDLKGLTVNERFDRVSETLEKILESWTPKSTDTVVGSPEVVGVSTTSIPEELDELPPKRHSRRCSEDMLECIPEAANAFVMDDLNILHDVSCEPRGISTPDLGKRASSGGSLTPRSPLLTPRTNQIELLLSGRRTISEHENYQQISKLLDIARSIANVNTNEYSALEFMLDRLEELKYAIQDRKVDALVVETFGRRIEKLLQEKYVLLCGQIEDEKLESSNTMADEESSVEDDTHRSLRASPINPCSKDRTSIEDFEIIKPISRGAFGRVFLARKTATGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLFSLLRNLGCLEEDMARVYVAELVLALEYLHSLNVIHRDLKPDNLLIGPDGHIKLTDFGLSKVGLINSTDDLSAQSVNSTSFLQRDEPKEASLKREHRQKHSVVGTPDYLAPEILLGMGHGATADWWSVGVILFELLVGIPPFNAAHPQVGHLKFAVTFILQIFNNIMNRDIPWPKVPEEMSYEAHDLINKLLMENPVQRLGATGAREVKRHAFFNGINWDTLARQKAAFIPSTETLDTSYFMSRYIWNPEDEHVHGASDFDDMTDTSSVSCSSSSYSVVQDEDADECGNLADFSTPTHNVKYSFSNFSFKNLSQLASINYDLLVKSSKESVEASKPEVP

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_MAST

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.440
	SRR3591706	second leaf	0.206
	SRR3591707	mature leaf	0.309
	SRR3591708	Shoot apex	0.590
	SRR3591709	Stem	0.464
	SRR3591710	White floral bud	4.919
	SRR3591711	White flower	1.286
	SRR3591712	Green floral bud	4.808
	SRR3591713	Yellow flower	1.361
SRP173429	SRR8316895	Juvenile bud stage	0.614
	SRR8316896	Juvenile bud stage	3.174
	SRR8316897	Juvenile bud stage	1.830
	SRR8316894	Third green stage	1.431
	SRR8316900	Third green stage	4.050
	SRR8316901	Third green stage	4.671
	SRR8316898	Complete white stage	0.671
	SRR8316899	Complete white stage	0.510
	SRR8316903	Complete white stage	1.109
	SRR8316902	Silver flowering stage	0.721
	SRR8316904	Silver flowering stage	0.820
	SRR8316905	Silver flowering stage	0.385
	SRR8316906	Gold flowering stage	0.887
	SRR8316907	Gold flowering stage	1.167
	SRR8316908	Gold flowering stage	0.979
SRP132670	SRR6706286	Control	2.056
	SRR6706287	Light intensity 50%	2.402
	SRR6706288	Light intensity 20%	1.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.788
	CNS0095593	Slightly white alabastrum(diploid) 2	1.843
	CNS0095594	Slightly white alabastrum(diploid) 3	2.707
	CNS0095595	Whole white alabastrum(diploid) 2	3.248
	CNS0095596	Whole white alabastrum(diploid) 3	4.263
	CNS0095597	Whole white alabastrum(diploid) 4	5.058
	CNS0095598	Silvery flower (diploied) 1	0.564
	CNS0095599	Silvery flower (diploied) 2	0.414
	CNS0095600	Silvery flower (diploied) 3	1.722
	CNS0095601	Golden flower (diploid) 1	0.362
	CNS0095602	Golden flower (diploid) 2	0.638
	CNS0095603	Golden flower (diploid) 3	0.918
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.091
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.397
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.273
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.632
	CNS0095610	Silvery flower (diploied) 1	1.005
	CNS0095611	Silvery flower (diploied) 2	0.822
	CNS0095612	Silvery flower (diploied) 3	2.561
	CNS0095613	Golden flower (tetraploid) 1	0.931
	CNS0095614	Golden flower (tetraploid) 2	0.432
	CNS0095615	Golden flower (tetraploid) 3	0.656
CRA001975	CRR073297	Stem 1	0.997
	CRR073298	Stem 2	1.072
	CRR073299	Stem 3	0.782
	CRR073300	Leaf 1	2.213
	CRR073301	Leaf 2	2.282
	CRR073302	Leaf 3	0.960
	CRR073303	Juvenile bud 1	1.456
	CRR073304	Juvenile bud 2	1.121
	CRR073305	Juvenile bud 3	0.533
	CRR073306	Third green 1	2.298
	CRR073307	Third green 2	1.911
	CRR073308	Third green 3	2.064
	CRR073309	Second white 1	1.324
	CRR073310	Second white 2	1.000
	CRR073311	Second white 3	0.767
	CRR073312	Silver flowering 1	0.981
	CRR073313	Silver flowering 2	1.285
	CRR073314	Silver flowering 3	1.383
	CRR073315	Gold flowering 1	0.345
	CRR073316	Gold flowering 2	0.074
	CRR073317	Gold flowering 3	0.307
	CRR073318	Tawny withering 1	1.634
	CRR073319	Tawny withering 2	1.232
	CRR073320	Tawny withering 3	0.772