Gene detail

Detail information of GWHGAAZE026413

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605198.1	8.679E-172	PREDICTED: luc7-like protein 3 [Nicotiana tomentosiformis]
trEMBL	tr\|A0A022QVH2\|A0A022QVH2_ERYGU	2E-158	Uncharacterized protein {ECO:0000313\|EMBL:EYU31318.1}
TAIR10	AT5G51410.3	2E-101	LUC7 N_terminus domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4279223	4285061	+
GWHAAZE00000008	mRNA	4279223	4285061	+
GWHAAZE00000008	exon	4279223	4279265	+
GWHAAZE00000008	exon	4279461	4279589	+
GWHAAZE00000008	exon	4279820	4279859	+
GWHAAZE00000008	exon	4282946	4283010	+
GWHAAZE00000008	exon	4283119	4283306	+
GWHAAZE00000008	exon	4283921	4284133	+
GWHAAZE00000008	exon	4284741	4285061	+
GWHAAZE00000008	CDS	4279223	4279265	+
GWHAAZE00000008	CDS	4279461	4279589	+
GWHAAZE00000008	CDS	4279820	4279859	+
GWHAAZE00000008	CDS	4282946	4283010	+
GWHAAZE00000008	CDS	4283119	4283306	+
GWHAAZE00000008	CDS	4283921	4284133	+
GWHAAZE00000008	CDS	4284741	4285061	+

Transcript Sequence
>GWHTAAZE026447 ATGGACGCCCAAAGAGCTTTACTAGATGAACTTATGGGCTCAGCTCGAAATTTGACTGATGAAGAGCGAAAGGGATACAAGGAACTTACGTGGGATGATAAGGAAGTCTGTGGATTCTACATGGTTCGATTTTGCCCTCATGATCTCTTTGTCAACACTCGGAGTGATCTAGGTGCATGTCCAAAAATTCATGATCCAAAGTTGAAAGAAAGTTTTGAGAAGTCTCCTCGACATGACTCATATGTGCCAAAGTTTGAAGCAGAACTGGCTCATTTCTATAGAAGAGTTAGGCGGGGCCGAGAACGCCTTTCTCAAGAGGTTGAAGTGCCCCCTCCAACTCCTGTGCTGGGTGAAAAATCTGAGCACTTAACTGTGCTGGAGGAGAAAATAAAGAACCTGCTTGAACAAGTGGAGGCCCTTGGTGAAGCAGGCAAGGTGGATGAAGCTGAAGCACTCATGAGAAAGGTGGATCTGCTTAACATTGAGAAGACGATTTTGAGCCAGCAGCAACCCCAAAATGACAAATTACTAATGCTCCAGGAGAAAAAGATGGCGCTGTGCGAAACATGCGGTTCTTTTCTAGTTGCAAATGATGCCATTGAGCGAACTCAGTCCCATGTTACTGGCAAGCAGCACATTGGTTATGGCATGGTCCGGGATTTCCTGTCCGAGTACAAGGAAGCTAAGGAGAAGGCAAGGGAAGAGGAACGCTTAGCAAGAGAGAAGGAAGCAGAAGAACGGAGGAAGCAAAGGGAGAAGGAAAATGAGAGTAGACGTAGAAGTGGTTCTTCAGATAGAGACAGAAATCGTGACAGGTACCGAGAACGGGATCGCGAAAGGTCTCGAGATAGAAACGGTAGAGGAGTCCGCGACGGAGGAAAAGGATATGACAGGAACGGACGAGAGGGAAGCAGAGACCGTTACCGTGAGCGTGACAGAAGCAGGTCCCGTTCGCCCGTTCGGCGTGGTCACAGGAGGTCCCCAATTCGCCCATATTAG

Network for GWHGAAZE026413

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0245	map03022 Basal transcription factors GO:0005685 U1 snRNP GOslim:cellular_component GO:0005669 transcription factor TFIID complex GOslim:cellular_component GO:0006376 mRNA splice site selection GOslim:biological_process GO:0006352 DNA-templated transcription, initiation GOslim:biological_process GO:0003676 nucleic acid binding GOslim:molecular_function GO:0003729 mRNA binding GOslim:molecular_function map03040 Spliceosome map04657 IL-17 signaling pathway

Module ID

Function Annotation

CFinderModule0245

map03022 Basal transcription factors
GO:0005685 U1 snRNP GOslim:cellular_component
GO:0005669 transcription factor TFIID complex GOslim:cellular_component
GO:0006376 mRNA splice site selection GOslim:biological_process
GO:0006352 DNA-templated transcription, initiation GOslim:biological_process
GO:0003676 nucleic acid binding GOslim:molecular_function
GO:0003729 mRNA binding GOslim:molecular_function
map03040 Spliceosome
map04657 IL-17 signaling pathway

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03194.16	LUC7	2	242	1.10E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006376	biological_process	mRNA splice site selection
GO:0005685	cellular_component	U1 snRNP
GO:0003729	molecular_function	mRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.282
	SRR3591706	second leaf	21.470
	SRR3591707	mature leaf	23.831
	SRR3591708	Shoot apex	25.451
	SRR3591709	Stem	28.635
	SRR3591710	White floral bud	26.984
	SRR3591711	White flower	27.903
	SRR3591712	Green floral bud	24.228
	SRR3591713	Yellow flower	23.655
SRP173429	SRR8316895	Juvenile bud stage	37.105
	SRR8316896	Juvenile bud stage	46.532
	SRR8316897	Juvenile bud stage	22.326
	SRR8316894	Third green stage	21.045
	SRR8316900	Third green stage	46.642
	SRR8316901	Third green stage	51.575
	SRR8316898	Complete white stage	16.607
	SRR8316899	Complete white stage	62.692
	SRR8316903	Complete white stage	36.871
	SRR8316902	Silver flowering stage	19.714
	SRR8316904	Silver flowering stage	23.224
	SRR8316905	Silver flowering stage	15.493
	SRR8316906	Gold flowering stage	37.931
	SRR8316907	Gold flowering stage	36.802
	SRR8316908	Gold flowering stage	40.284
SRP132670	SRR6706286	Control	52.376
	SRR6706287	Light intensity 50%	52.595
	SRR6706288	Light intensity 20%	48.909
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.578
	CNS0095593	Slightly white alabastrum(diploid) 2	34.749
	CNS0095594	Slightly white alabastrum(diploid) 3	28.183
	CNS0095595	Whole white alabastrum(diploid) 2	22.648
	CNS0095596	Whole white alabastrum(diploid) 3	23.173
	CNS0095597	Whole white alabastrum(diploid) 4	19.147
	CNS0095598	Silvery flower (diploied) 1	35.385
	CNS0095599	Silvery flower (diploied) 2	28.662
	CNS0095600	Silvery flower (diploied) 3	25.649
	CNS0095601	Golden flower (diploid) 1	29.742
	CNS0095602	Golden flower (diploid) 2	27.010
	CNS0095603	Golden flower (diploid) 3	27.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.832
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.857
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.134
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.688
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.954
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.244
	CNS0095610	Silvery flower (diploied) 1	32.354
	CNS0095611	Silvery flower (diploied) 2	27.388
	CNS0095612	Silvery flower (diploied) 3	24.589
	CNS0095613	Golden flower (tetraploid) 1	24.785
	CNS0095614	Golden flower (tetraploid) 2	27.649
	CNS0095615	Golden flower (tetraploid) 3	24.366
CRA001975	CRR073297	Stem 1	64.567
	CRR073298	Stem 2	57.169
	CRR073299	Stem 3	25.751
	CRR073300	Leaf 1	66.722
	CRR073301	Leaf 2	65.580
	CRR073302	Leaf 3	21.264
	CRR073303	Juvenile bud 1	25.027
	CRR073304	Juvenile bud 2	11.690
	CRR073305	Juvenile bud 3	19.707
	CRR073306	Third green 1	5.462
	CRR073307	Third green 2	6.705
	CRR073308	Third green 3	6.231
	CRR073309	Second white 1	5.754
	CRR073310	Second white 2	8.261
	CRR073311	Second white 3	6.088
	CRR073312	Silver flowering 1	3.450
	CRR073313	Silver flowering 2	3.951
	CRR073314	Silver flowering 3	4.727
	CRR073315	Gold flowering 1	19.826
	CRR073316	Gold flowering 2	26.986
	CRR073317	Gold flowering 3	8.437
	CRR073318	Tawny withering 1	27.418
	CRR073319	Tawny withering 2	28.094
	CRR073320	Tawny withering 3	26.851