Gene detail

Detail information of GWHGAAZE026420

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO49934.1	0	hypothetical protein CISIN_1g009985mg [Citrus sinensis]
trEMBL	tr\|A0A067E3Z1\|A0A067E3Z1_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO49934.1}
TAIR10	AT5G07630.1	3E-167	lipid transporters

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4398679	4408004	-
GWHAAZE00000008	mRNA	4398679	4408004	-
GWHAAZE00000008	exon	4407904	4408004	-
GWHAAZE00000008	exon	4407748	4407808	-
GWHAAZE00000008	exon	4406505	4406599	-
GWHAAZE00000008	exon	4405832	4405992	-
GWHAAZE00000008	exon	4405036	4405187	-
GWHAAZE00000008	exon	4404725	4404843	-
GWHAAZE00000008	exon	4403539	4403702	-
GWHAAZE00000008	exon	4403286	4403360	-
GWHAAZE00000008	exon	4402844	4402915	-
GWHAAZE00000008	exon	4401902	4402039	-
GWHAAZE00000008	exon	4398679	4398917	-
GWHAAZE00000008	CDS	4407904	4408004	-
GWHAAZE00000008	CDS	4407748	4407808	-
GWHAAZE00000008	CDS	4406505	4406599	-
GWHAAZE00000008	CDS	4405832	4405992	-
GWHAAZE00000008	CDS	4405036	4405187	-
GWHAAZE00000008	CDS	4404725	4404843	-
GWHAAZE00000008	CDS	4403539	4403702	-
GWHAAZE00000008	CDS	4403286	4403360	-
GWHAAZE00000008	CDS	4402844	4402915	-
GWHAAZE00000008	CDS	4401902	4402039	-
GWHAAZE00000008	CDS	4398679	4398917	-

Transcript Sequence
>GWHTAAZE026454 ATGTTGAAGTCTTCTTTTGACAAGCAAGAACGATTTCCATTAGTTGGAGATGAAGACCGTGCGGCTGATCTCCCTCGCACTTTCAAGTACTTAATGGGTCAGGGAATTCCATTCATATTTAATTCATGGATCGTTAGACACCTTACTGAAGAAGCTTACGCGCTGTATGCTGTGCAATTTCATCTTTTCGTCACCTGTGTCTTGTTCCTTAGTCGGGAGGGTTTCCGGAGAGCGTGCATGAGGGCGGACATTAGATGTGATGGTGCATCAACGGGAGAAAATGCAGCAAATCTTTTGAAAGTAGCCTGGTTGACTTTCCCATTTGGAGCAGTTATCACAATGGCGGCATGTTTATTTGTCTTCTGGTGGCAAGATTTAAGTTATTCTAACCCATATGCTCAAGCTATCTTAATAAATGGCTTTGCTTGTATATTGGAGTTATTGGCAGAACCCTTGTATATTCTTTCCCAAAACCTGCTTCTCCTCAAACTGCGGTTGGTAGTTGAAACTGCAGCAACTCTTTTCCGTTGTGTAACAACCTACATGCTCATTGTCAAGCAACCTGAAATGGAGAAAGCGATTGTATTTGCATTGTCACAAACTGCATATGGAGCAGGCATGTTCTTGGGTTACTGGGGCTACTTTCTTCTTTTCCATGTATATAAAACTTCAGATCTTTTTCCTTTCAGGCTCGGAAATGTGGCAGACTTTGATAGGCAGCTCTCAAACATGTGTATGTTGTTTACCTTCCAATCTTTCCGAAAGCTGATCCTTCAAGAAGGCGAAAAACTGGTCCTTGTTTGGTTGGATACACCATATAATCAAGCAGTATATGGTCTTGTAGACAAATTAGGTAGCTTAGTGGTGAGGTTGGTGTTTCTTCCATTCGAAGAAAGTTCATACGCTACATTTGCAAGGTCGGCATCAGGAGAATACGCACAAAAAAGGAGAAAATTAGGAACTAGTCTTGCAGATGCTCTGAAGCTTGTTCTGTTAATTGGGTTGGTTGTTATGGCATTTGGCCCGAGCTATTCTTACTCTCTGATCAGATTGTTATATGGTCGGAAATGGAGTGATGGAGAAGCCTCCACAGCCCTCCGATATTATTGTCTCTATGTCATTGTTCTGGCAATGAATGGAACCTCTGAAGCATTCTTGCATGCAGTTGCAACAGAGAATCAGCTCAAGCGTTCTAATGATTCCTTGCTTATATTCTCATTTATTTACATACTTCTAAATGTCTCACTAATTCGATCTGCTGGTGCTGTGGGATTAATATTTGCAAATTCCTTGAGTATCCTTTTACCTTTGCCCAAAGGACACATAAATTTGCTTTCTCTATGGTGGTATGATTCATTTTCTTTCATTTTTGCTTGA

Network for GWHGAAZE026420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04506.14	Rft-1	33	434	1.20E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006869	biological_process	lipid transport
GO:0016021	cellular_component	integral component of membrane
GO:0005319	molecular_function	lipid transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.564
	SRR3591706	second leaf	9.570
	SRR3591707	mature leaf	10.792
	SRR3591708	Shoot apex	16.439
	SRR3591709	Stem	13.773
	SRR3591710	White floral bud	17.309
	SRR3591711	White flower	18.631
	SRR3591712	Green floral bud	17.521
	SRR3591713	Yellow flower	14.362
SRP173429	SRR8316895	Juvenile bud stage	11.764
	SRR8316896	Juvenile bud stage	14.606
	SRR8316897	Juvenile bud stage	6.229
	SRR8316894	Third green stage	7.557
	SRR8316900	Third green stage	14.555
	SRR8316901	Third green stage	13.915
	SRR8316898	Complete white stage	6.414
	SRR8316899	Complete white stage	20.397
	SRR8316903	Complete white stage	11.646
	SRR8316902	Silver flowering stage	7.991
	SRR8316904	Silver flowering stage	12.279
	SRR8316905	Silver flowering stage	5.175
	SRR8316906	Gold flowering stage	17.145
	SRR8316907	Gold flowering stage	16.664
	SRR8316908	Gold flowering stage	18.413
SRP132670	SRR6706286	Control	8.519
	SRR6706287	Light intensity 50%	10.078
	SRR6706288	Light intensity 20%	10.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.755
	CNS0095593	Slightly white alabastrum(diploid) 2	7.286
	CNS0095594	Slightly white alabastrum(diploid) 3	7.690
	CNS0095595	Whole white alabastrum(diploid) 2	6.802
	CNS0095596	Whole white alabastrum(diploid) 3	6.571
	CNS0095597	Whole white alabastrum(diploid) 4	5.883
	CNS0095598	Silvery flower (diploied) 1	10.529
	CNS0095599	Silvery flower (diploied) 2	7.956
	CNS0095600	Silvery flower (diploied) 3	14.272
	CNS0095601	Golden flower (diploid) 1	9.882
	CNS0095602	Golden flower (diploid) 2	11.389
	CNS0095603	Golden flower (diploid) 3	12.501
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.621
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.767
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.985
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.465
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.330
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.247
	CNS0095610	Silvery flower (diploied) 1	18.219
	CNS0095611	Silvery flower (diploied) 2	14.970
	CNS0095612	Silvery flower (diploied) 3	14.196
	CNS0095613	Golden flower (tetraploid) 1	7.412
	CNS0095614	Golden flower (tetraploid) 2	15.655
	CNS0095615	Golden flower (tetraploid) 3	13.818
CRA001975	CRR073297	Stem 1	9.995
	CRR073298	Stem 2	7.174
	CRR073299	Stem 3	4.936
	CRR073300	Leaf 1	9.255
	CRR073301	Leaf 2	6.480
	CRR073302	Leaf 3	4.113
	CRR073303	Juvenile bud 1	4.727
	CRR073304	Juvenile bud 2	3.473
	CRR073305	Juvenile bud 3	4.516
	CRR073306	Third green 1	2.020
	CRR073307	Third green 2	1.522
	CRR073308	Third green 3	1.509
	CRR073309	Second white 1	2.225
	CRR073310	Second white 2	4.187
	CRR073311	Second white 3	3.955
	CRR073312	Silver flowering 1	1.670
	CRR073313	Silver flowering 2	3.715
	CRR073314	Silver flowering 3	1.467
	CRR073315	Gold flowering 1	3.414
	CRR073316	Gold flowering 2	6.342
	CRR073317	Gold flowering 3	2.126
	CRR073318	Tawny withering 1	5.549
	CRR073319	Tawny withering 2	6.029
	CRR073320	Tawny withering 3	5.037