Gene detail

Detail information of GWHGAAZE026445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009609816.1	6.83833E-80	PREDICTED: transcription factor MYB1R1-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	1E-30	Transcription factor DIVARICATA
trEMBL	tr\|K4C4M7\|K4C4M7_SOLLC	3E-85	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g034030.2.1}
TAIR10	AT5G61620.1	2E-31	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4824514	4827743	+
GWHAAZE00000008	mRNA	4824514	4827743	+
GWHAAZE00000008	exon	4824514	4824874	+
GWHAAZE00000008	exon	4825798	4826009	+
GWHAAZE00000008	exon	4826120	4826182	+
GWHAAZE00000008	exon	4826285	4826338	+
GWHAAZE00000008	exon	4826427	4826531	+
GWHAAZE00000008	exon	4827450	4827743	+
GWHAAZE00000008	CDS	4824514	4824874	+
GWHAAZE00000008	CDS	4825798	4826009	+
GWHAAZE00000008	CDS	4826120	4826182	+
GWHAAZE00000008	CDS	4826285	4826338	+
GWHAAZE00000008	CDS	4826427	4826531	+
GWHAAZE00000008	CDS	4827450	4827743	+

Transcript Sequence
>GWHTAAZE026479 ATGACGAAGGAATCTTGTGTTAGAAAGTGTTCACATTGTGGACATAATGGACATAATTTAAGAACATGCAATGGTAAGGGGTGTTTTAAGTTATTTGGTGTGAAGATTGATATTAATAATAATAATAATAATAATGCTTCGAAAGAAGATGAATCAACATCATCAATTAGAAAGAGCAGCAATGGTGGTGGCGGTGAGAAAAGAGAAGAGGAGGAATCGATTAGGAAGAGCAAAAGCATGGGGAATCTATCACTGCCTTCTAATTCCGACCACCGTGACGGAGATGCTACTGCCGCGGGCTATCTCTCCGATGGATTCATTCAATCGGAGCGACCCAAAAACGCTCATGAGAGGAAGAAAGGGGTGCCATGGACCGAGGATGAACACCGATTGTTCTTACTTGGTTTAAAAAATTTAGGGAAAGGCGATTGGAGAGGAATCTCAAAGAACTATGTACCCAGCAGGACCCCAACTCAAGTGGCTAGCCATGCTCAGAAGTATTTTATTAGGAAAACTACCACAGAGAAGAAGAAACGCCGATCAAGCGTATTTGACATGGCATTCAGAGAACAATCTCCACCTCCTCAAGCTTCCCCTGATTTGCCCTCTAATAAAGCTTCTGAAATCACACAACAGGTTAGCAATTCCTCAGTCTCTCCAGTGAAGAACACAACTGAAATCAAAGGACAGGCTAGCTCATCAACACATGCTGTAACCTCTGAGAAACCCCCACTTTCACCCGTGGCCAGAAATTATGGAATCCAAATTCCAGATTTCCGTCATATGCCATACATGATGGGGATGCCAAGAAATGTCCAGAACCTTCCTGCTGCTGACAGTTTGCCTACAGTATCTTTTGTACCGGTAATGAATTATAAACCGATGATGAATTATCCAAATGCTGGTTATGTCTATATACCCAATAATAGCCATGGGAACTTTGCTACTTGTGCACCATTTATGACTCAACCATCAAGTGGTCTACTGCCTCAGCTGCATCCTCAAGGTGAACCTCCGGTGGGTCCCCCAACTTCAGTTACTAAGAAAGGTGGTGGTTTGGAAGTCAGCATTGGAGCTCTTTCAATATGA

Network for GWHGAAZE026445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	123	167	3.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.042
	SRR3591706	second leaf	0.267
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.115
	SRR3591709	Stem	0.117
	SRR3591710	White floral bud	13.476
	SRR3591711	White flower	1.567
	SRR3591712	Green floral bud	14.592
	SRR3591713	Yellow flower	0.827
SRP173429	SRR8316895	Juvenile bud stage	2.799
	SRR8316896	Juvenile bud stage	9.246
	SRR8316897	Juvenile bud stage	4.197
	SRR8316894	Third green stage	3.213
	SRR8316900	Third green stage	15.904
	SRR8316901	Third green stage	13.775
	SRR8316898	Complete white stage	5.973
	SRR8316899	Complete white stage	1.474
	SRR8316903	Complete white stage	6.635
	SRR8316902	Silver flowering stage	4.157
	SRR8316904	Silver flowering stage	4.543
	SRR8316905	Silver flowering stage	1.646
	SRR8316906	Gold flowering stage	6.989
	SRR8316907	Gold flowering stage	5.563
	SRR8316908	Gold flowering stage	7.101
SRP132670	SRR6706286	Control	5.463
	SRR6706287	Light intensity 50%	6.153
	SRR6706288	Light intensity 20%	4.535
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.112
	CNS0095593	Slightly white alabastrum(diploid) 2	5.338
	CNS0095594	Slightly white alabastrum(diploid) 3	7.686
	CNS0095595	Whole white alabastrum(diploid) 2	9.223
	CNS0095596	Whole white alabastrum(diploid) 3	12.331
	CNS0095597	Whole white alabastrum(diploid) 4	11.942
	CNS0095598	Silvery flower (diploied) 1	0.666
	CNS0095599	Silvery flower (diploied) 2	0.711
	CNS0095600	Silvery flower (diploied) 3	1.538
	CNS0095601	Golden flower (diploid) 1	0.490
	CNS0095602	Golden flower (diploid) 2	0.700
	CNS0095603	Golden flower (diploid) 3	0.529
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.120
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.493
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.963
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.503
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.122
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.695
	CNS0095610	Silvery flower (diploied) 1	1.727
	CNS0095611	Silvery flower (diploied) 2	2.513
	CNS0095612	Silvery flower (diploied) 3	21.267
	CNS0095613	Golden flower (tetraploid) 1	2.934
	CNS0095614	Golden flower (tetraploid) 2	1.254
	CNS0095615	Golden flower (tetraploid) 3	2.878
CRA001975	CRR073297	Stem 1	2.780
	CRR073298	Stem 2	3.310
	CRR073299	Stem 3	1.856
	CRR073300	Leaf 1	8.798
	CRR073301	Leaf 2	7.744
	CRR073302	Leaf 3	5.279
	CRR073303	Juvenile bud 1	6.291
	CRR073304	Juvenile bud 2	6.809
	CRR073305	Juvenile bud 3	0.820
	CRR073306	Third green 1	17.759
	CRR073307	Third green 2	9.732
	CRR073308	Third green 3	15.415
	CRR073309	Second white 1	6.041
	CRR073310	Second white 2	12.961
	CRR073311	Second white 3	9.575
	CRR073312	Silver flowering 1	3.887
	CRR073313	Silver flowering 2	3.593
	CRR073314	Silver flowering 3	3.428
	CRR073315	Gold flowering 1	3.442
	CRR073316	Gold flowering 2	3.093
	CRR073317	Gold flowering 3	2.794
	CRR073318	Tawny withering 1	1.559
	CRR073319	Tawny withering 2	1.556
	CRR073320	Tawny withering 3	1.564