Gene detail

Detail information of GWHGAAZE026453

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22490.1	7.2302E-132	hypothetical protein JCGZ_26321 [Jatropha curcas]
trEMBL	tr\|A0A067JR57\|A0A067JR57_JATCU	3E-132	U6 snRNA phosphodiesterase {ECO:0000256\|HAMAP-Rule:MF_03040}
TAIR10	AT5G51170.1	2E-78	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4910292	4913119	+
GWHAAZE00000008	mRNA	4910292	4913119	+
GWHAAZE00000008	exon	4910292	4910481	+
GWHAAZE00000008	exon	4910557	4910649	+
GWHAAZE00000008	exon	4911522	4911768	+
GWHAAZE00000008	exon	4911886	4911982	+
GWHAAZE00000008	exon	4912728	4912793	+
GWHAAZE00000008	exon	4912919	4913119	+
GWHAAZE00000008	CDS	4910292	4910481	+
GWHAAZE00000008	CDS	4910557	4910649	+
GWHAAZE00000008	CDS	4911522	4911768	+
GWHAAZE00000008	CDS	4911886	4911982	+
GWHAAZE00000008	CDS	4912728	4912793	+
GWHAAZE00000008	CDS	4912919	4913119	+

Transcript Sequence
>GWHTAAZE026487 ATGGAGGCCCTGAAAGCATCATACGCAGACACTTCTGACTCAGACTCCGATCATCAACCAACCAAGTCCAAGTCCATTTTCACCACCACCGGACAATCACCTGCCCCTCTGCCTCCCCCACCTCTTTCCCTTCTCAAACCTCCCAATTCCCTCCTCGGTAACTATTCCACTATGTCTATACACACGCTCCGAACACCTGATTACCTACAAACTGGTCAGGCCAGTCGAGTTCGCTCCTTTCCTCATGTTGAGGGTAACTATGCTTTACATGTTTATATCCCAGTTCACATACCATCTGCGCCAAAGGAGTTGACACAGTTCTTGAAGAAAGTCTCATTTCTCATACCCGGTCTGCATGTTGTTGATGCTGACGTCCCACTGATTAATCTGGTCAAAGACGATCAGAAGCTCGAAGAGGTTGCCTTAGGGAGGGAATTCCACATAAGTTTAGGAAGAACAGTTCCAATACGAGTTCACCAAATAGATTCGGTGGTGGCCATGCTTCGCCAAAAACTTCAGTTTCTGAGGCGGTACTGGATTGATTTTAGTAAGTGGGAGATTTTTGTCAATGATGATCACACACGTACCTTCCTTTCAATGGAAGTTAAAACAGGAGGCTTACCTGAGATAACAAAGCAGATTCAAGCCGTCAATGAGGTTTATAAGCGTCATAATCTACCTGAATTTTATAAGAATCCTCGCCCTCATATATCGATAGCTTGGGCAAATGGTGACATCAGCAATTTGCTGAAGAGAGTGGTTGGAGAAGAAATCAAGAGACATGCAAGTGTCGGGGAATTATCAAAGAAACGCCTTTTTACCTGCAAATTCGCAGGCATTGAATGTAAGATAGGCAAAAAAATCTATAAAATTTGTAAATGTCAAGAAGAATAG

Network for GWHGAAZE026453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0255	GO:0034477 U6 snRNA 3'-end processing GOslim:biological_process GO:0004518 nuclease activity GOslim:molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09749.10	HVSL	67	292	9.20E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034477	biological_process	U6 snRNA 3'-end processing
GO:0004518	molecular_function	nuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.872
	SRR3591706	second leaf	9.083
	SRR3591707	mature leaf	11.859
	SRR3591708	Shoot apex	11.659
	SRR3591709	Stem	24.616
	SRR3591710	White floral bud	11.988
	SRR3591711	White flower	15.248
	SRR3591712	Green floral bud	11.527
	SRR3591713	Yellow flower	7.324
SRP173429	SRR8316895	Juvenile bud stage	4.244
	SRR8316896	Juvenile bud stage	5.948
	SRR8316897	Juvenile bud stage	1.899
	SRR8316894	Third green stage	2.187
	SRR8316900	Third green stage	6.904
	SRR8316901	Third green stage	5.884
	SRR8316898	Complete white stage	1.762
	SRR8316899	Complete white stage	10.418
	SRR8316903	Complete white stage	3.263
	SRR8316902	Silver flowering stage	1.634
	SRR8316904	Silver flowering stage	2.742
	SRR8316905	Silver flowering stage	1.157
	SRR8316906	Gold flowering stage	5.708
	SRR8316907	Gold flowering stage	5.963
	SRR8316908	Gold flowering stage	4.651
SRP132670	SRR6706286	Control	6.533
	SRR6706287	Light intensity 50%	7.358
	SRR6706288	Light intensity 20%	6.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.994
	CNS0095593	Slightly white alabastrum(diploid) 2	8.396
	CNS0095594	Slightly white alabastrum(diploid) 3	6.451
	CNS0095595	Whole white alabastrum(diploid) 2	7.826
	CNS0095596	Whole white alabastrum(diploid) 3	6.413
	CNS0095597	Whole white alabastrum(diploid) 4	5.388
	CNS0095598	Silvery flower (diploied) 1	14.702
	CNS0095599	Silvery flower (diploied) 2	9.753
	CNS0095600	Silvery flower (diploied) 3	8.573
	CNS0095601	Golden flower (diploid) 1	6.985
	CNS0095602	Golden flower (diploid) 2	5.653
	CNS0095603	Golden flower (diploid) 3	5.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.838
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.540
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.425
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.272
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.492
	CNS0095610	Silvery flower (diploied) 1	8.042
	CNS0095611	Silvery flower (diploied) 2	10.478
	CNS0095612	Silvery flower (diploied) 3	9.581
	CNS0095613	Golden flower (tetraploid) 1	3.703
	CNS0095614	Golden flower (tetraploid) 2	7.929
	CNS0095615	Golden flower (tetraploid) 3	3.157
CRA001975	CRR073297	Stem 1	6.215
	CRR073298	Stem 2	6.399
	CRR073299	Stem 3	3.823
	CRR073300	Leaf 1	7.007
	CRR073301	Leaf 2	5.397
	CRR073302	Leaf 3	5.842
	CRR073303	Juvenile bud 1	3.536
	CRR073304	Juvenile bud 2	4.351
	CRR073305	Juvenile bud 3	7.112
	CRR073306	Third green 1	1.867
	CRR073307	Third green 2	2.776
	CRR073308	Third green 3	3.820
	CRR073309	Second white 1	1.105
	CRR073310	Second white 2	2.053
	CRR073311	Second white 3	0.937
	CRR073312	Silver flowering 1	1.706
	CRR073313	Silver flowering 2	0.970
	CRR073314	Silver flowering 3	0.680
	CRR073315	Gold flowering 1	5.940
	CRR073316	Gold flowering 2	6.943
	CRR073317	Gold flowering 3	3.808
	CRR073318	Tawny withering 1	9.948
	CRR073319	Tawny withering 2	7.991
	CRR073320	Tawny withering 3	11.417