Gene detail

Detail information of GWHGAAZE026513

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13926.1	0	unnamed protein product [Coffea canephora]
COG	YP_007162110.1	2E-160	uroporphyrinogen decarboxylase
Swissprot	tr\|Q42967\|DCUP_TOBAC	0	Uroporphyrinogen decarboxylase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UZS2\|A0A068UZS2_COFCA	0	Uroporphyrinogen decarboxylase {ECO:0000256\|RuleBase:RU000554}
TAIR10	AT2G40490.1	1E-175	Uroporphyrinogen decarboxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5740270	5744198	-
GWHAAZE00000008	mRNA	5740270	5744198	-
GWHAAZE00000008	exon	5740270	5740785	-
GWHAAZE00000008	exon	5741405	5741530	-
GWHAAZE00000008	exon	5742495	5742683	-
GWHAAZE00000008	exon	5743166	5743276	-
GWHAAZE00000008	exon	5743521	5743675	-
GWHAAZE00000008	exon	5744186	5744198	-
GWHAAZE00000008	CDS	5744186	5744198	-
GWHAAZE00000008	CDS	5743521	5743675	-
GWHAAZE00000008	CDS	5743166	5743276	-
GWHAAZE00000008	CDS	5742495	5742683	-
GWHAAZE00000008	CDS	5741405	5741530	-
GWHAAZE00000008	CDS	5740270	5740785	-

Transcript Sequence
>GWHTAAZE026547 ATGGAGTGGGAGAGGACAATTGCAGAACCTAAAGTTATTAACACAACTGAACCTCTGTTGCTTAATGCTGTTCGAGGGGATGAAGTTCAAAGACCCCCAGTTTGGCTTATGAGACAAGCAGGGAGGTACATGAAGGCAGGTTTATATAACTACACTTTTGGATTCTGTAGTTACCAACTCCTCTGCGAGAAGCATCCATCCTTTCGTGAAAGATCAGAAAATGTAGATCTTGTAGTGGAAATTTCTCTGCAGCCATGGAAAGTGTTTAGGCCTGATGGGGTGATTTTATTCTCGGACATTCTTACCCCTCTCCCTGGAATGAACATACCTTTTGACATTATAAAAGGAAAGGGTCCGGTCATATTCAATCCGCTAAGCACAGCTGCTGATGTTGCACAAGTGAGAGAGTTCACTCCTGAAGAGTCAGTTCCATATGTTGGTGAAGCATTGGCAATCTTGCGAAAAGAGGTAAATAATGAAGCAGCAGTGCTGGGATTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGGCGGTTCCTCAAAGCACTTTGCAAAAATCAAGAGACTAGCTTTCTCGCAGCCTAAGGTCCTCCATGCATTACTTAACAAATTTGCAACCTCCATGGCAAAATACATCCAATACCAAGCCAACAACGGAGCACAAGCTGTTCAAATCTTCGACTCATGGGCAACGGAGCTTAGCCCAGTTGACTTTGAAGAGTTCAGTTTACCTTACTTAAAGCAAATAGTTGACACTGTTAAAAAAACCCATCCAAATCTCCCACTCATCCTCTATGCAAGCGGATCAGGGGGATTGCTCGAGAGGTTACCGTTAACGGGCGTTGATGTGGTGAGCCTTGATTGGACTGTTGATATGGCTGAGGGTAGAAGGCGATTGGGACCCGAAGTTGCGGTCCAGGGAAATGTGGACCCCGGCGTTCTTTTTGGCTCGAAAGAGTTTATAACGGCACGGATAAATGATACCGTGAAGAAAGCAGGTAAAGGGAAACATATATTGAATCTTGGACATGGAATTGTTGTTGGTACGCCCGAGGAAAATGTCGCACATTTCTTTGAGGTTGCGAAAGGAATTAGATATTGA

Network for GWHGAAZE026513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01208.18	URO-D	17	365	2.60E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01599	hemE, UROD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006779	biological_process	porphyrin-containing compound biosynthetic process
GO:0004853	molecular_function	uroporphyrinogen decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	128.115
	SRR3591706	second leaf	216.215
	SRR3591707	mature leaf	108.294
	SRR3591708	Shoot apex	170.425
	SRR3591709	Stem	46.168
	SRR3591710	White floral bud	47.549
	SRR3591711	White flower	44.314
	SRR3591712	Green floral bud	50.974
	SRR3591713	Yellow flower	56.347
SRP173429	SRR8316895	Juvenile bud stage	43.842
	SRR8316896	Juvenile bud stage	42.280
	SRR8316897	Juvenile bud stage	30.883
	SRR8316894	Third green stage	17.538
	SRR8316900	Third green stage	61.503
	SRR8316901	Third green stage	51.149
	SRR8316898	Complete white stage	26.247
	SRR8316899	Complete white stage	61.765
	SRR8316903	Complete white stage	26.926
	SRR8316902	Silver flowering stage	19.993
	SRR8316904	Silver flowering stage	23.729
	SRR8316905	Silver flowering stage	12.691
	SRR8316906	Gold flowering stage	37.142
	SRR8316907	Gold flowering stage	36.523
	SRR8316908	Gold flowering stage	52.539
SRP132670	SRR6706286	Control	51.224
	SRR6706287	Light intensity 50%	49.782
	SRR6706288	Light intensity 20%	56.707
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.075
	CNS0095593	Slightly white alabastrum(diploid) 2	38.920
	CNS0095594	Slightly white alabastrum(diploid) 3	35.499
	CNS0095595	Whole white alabastrum(diploid) 2	37.814
	CNS0095596	Whole white alabastrum(diploid) 3	41.546
	CNS0095597	Whole white alabastrum(diploid) 4	40.452
	CNS0095598	Silvery flower (diploied) 1	73.661
	CNS0095599	Silvery flower (diploied) 2	65.735
	CNS0095600	Silvery flower (diploied) 3	58.356
	CNS0095601	Golden flower (diploid) 1	56.642
	CNS0095602	Golden flower (diploid) 2	63.258
	CNS0095603	Golden flower (diploid) 3	56.686
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.739
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.711
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.422
	CNS0095610	Silvery flower (diploied) 1	47.816
	CNS0095611	Silvery flower (diploied) 2	63.281
	CNS0095612	Silvery flower (diploied) 3	55.326
	CNS0095613	Golden flower (tetraploid) 1	44.424
	CNS0095614	Golden flower (tetraploid) 2	41.571
	CNS0095615	Golden flower (tetraploid) 3	54.458
CRA001975	CRR073297	Stem 1	83.530
	CRR073298	Stem 2	77.693
	CRR073299	Stem 3	83.321
	CRR073300	Leaf 1	54.078
	CRR073301	Leaf 2	60.630
	CRR073302	Leaf 3	69.965
	CRR073303	Juvenile bud 1	65.146
	CRR073304	Juvenile bud 2	53.974
	CRR073305	Juvenile bud 3	44.625
	CRR073306	Third green 1	32.530
	CRR073307	Third green 2	24.230
	CRR073308	Third green 3	28.967
	CRR073309	Second white 1	27.068
	CRR073310	Second white 2	27.390
	CRR073311	Second white 3	23.077
	CRR073312	Silver flowering 1	19.777
	CRR073313	Silver flowering 2	13.611
	CRR073314	Silver flowering 3	15.302
	CRR073315	Gold flowering 1	144.940
	CRR073316	Gold flowering 2	178.996
	CRR073317	Gold flowering 3	89.564
	CRR073318	Tawny withering 1	44.911
	CRR073319	Tawny withering 2	40.827
	CRR073320	Tawny withering 3	36.828