Detail information of GWHGAAZE026570


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIC33056.15.43759E-75F-box containing protein [Panax ginseng]
Swissprottr|Q9FFF5|ALFL1_ARATH9E-59PHD finger protein ALFIN-LIKE 1
trEMBLtr|A0A060IGF7|A0A060IGF7_PANGI2E-75F-box containing protein {ECO:0000313|EMBL:AIC33056.1}
TAIR10AT5G05610.21E-43alfin-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene67005786702738-
GWHAAZE00000008mRNA67005786702738-
GWHAAZE00000008exon67005786700832-
GWHAAZE00000008exon67013676701487-
GWHAAZE00000008exon67025646702603-
GWHAAZE00000008exon67027026702738-
GWHAAZE00000008CDS67027026702738-
GWHAAZE00000008CDS67025646702603-
GWHAAZE00000008CDS67013676701487-
GWHAAZE00000008CDS67005786700832-
Transcript Sequence

Network for GWHGAAZE026570

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD961443.40E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf92.796
SRR3591706second leaf75.301
SRR3591707mature leaf67.848
SRR3591708Shoot apex118.995
SRR3591709Stem100.563
SRR3591710White floral bud81.268
SRR3591711White flower89.257
SRR3591712Green floral bud105.507
SRR3591713Yellow flower82.553
SRP173429 SRR8316895Juvenile bud stage 53.818
SRR8316896Juvenile bud stage 78.342
SRR8316897Juvenile bud stage 34.369
SRR8316894Third green stage 27.000
SRR8316900Third green stage 76.647
SRR8316901Third green stage 81.298
SRR8316898Complete white stage 26.223
SRR8316899Complete white stage 87.345
SRR8316903Complete white stage 42.717
SRR8316902Silver flowering stage26.738
SRR8316904Silver flowering stage25.163
SRR8316905Silver flowering stage17.548
SRR8316906Gold flowering stage 46.035
SRR8316907Gold flowering stage 52.690
SRR8316908Gold flowering stage 48.158
SRP132670SRR6706286Control60.820
SRR6706287Light intensity 50%62.835
SRR6706288Light intensity 20%64.601
CNP0000432CNS0095592Slightly white alabastrum(diploid) 188.309
CNS0095593Slightly white alabastrum(diploid) 290.482
CNS0095594Slightly white alabastrum(diploid) 390.893
CNS0095595Whole white alabastrum(diploid) 267.032
CNS0095596Whole white alabastrum(diploid) 364.587
CNS0095597Whole white alabastrum(diploid) 450.411
CNS0095598Silvery flower (diploied) 167.108
CNS0095599Silvery flower (diploied) 269.848
CNS0095600Silvery flower (diploied) 357.562
CNS0095601Golden flower (diploid) 171.437
CNS0095602Golden flower (diploid) 255.203
CNS0095603Golden flower (diploid) 355.398
CNS0095604Slightly white alabastrum(tetraploid) 184.325
CNS0095605Slightly white alabastrum(tetraploid) 281.530
CNS0095606Slightly white alabastrum(tetraploid) 3114.403
CNS0095607Whole white alabastrum(tetraploid) 153.416
CNS0095608Whole white alabastrum(tetraploid) 246.336
CNS0095609Whole white alabastrum(tetraploid) 374.747
CNS0095610Silvery flower (diploied) 165.359
CNS0095611Silvery flower (diploied) 259.203
CNS0095612Silvery flower (diploied) 336.847
CNS0095613Golden flower (tetraploid) 151.783
CNS0095614Golden flower (tetraploid) 264.628
CNS0095615Golden flower (tetraploid) 332.421
CRA001975CRR073297Stem 196.607
CRR073298Stem 290.162
CRR073299Stem 3111.596
CRR073300Leaf 196.309
CRR073301Leaf 2102.665
CRR073302Leaf 399.377
CRR073303Juvenile bud 1100.921
CRR073304Juvenile bud 281.707
CRR073305Juvenile bud 3104.545
CRR073306Third green 125.373
CRR073307Third green 231.678
CRR073308Third green 330.379
CRR073309Second white 127.353
CRR073310Second white 224.880
CRR073311Second white 322.526
CRR073312Silver flowering 128.960
CRR073313Silver flowering 227.744
CRR073314Silver flowering 318.319
CRR073315Gold flowering 172.135
CRR073316Gold flowering 267.747
CRR073317Gold flowering 366.894
CRR073318Tawny withering 1122.800
CRR073319Tawny withering 2109.215
CRR073320Tawny withering 3118.258