Gene detail

Detail information of GWHGAAZE026590

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268768.3	1.5662E-145	PREDICTED: syntaxin-31 [Vitis vinifera]
Swissprot	tr\|Q9FFK1\|SYP31_ARATH	1E-100	Syntaxin-31
trEMBL	tr\|D7T4S5\|D7T4S5_VITVI	6E-146	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25507.3}
TAIR10	AT5G05760.1	8E-62	syntaxin of plants 31

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7064360	7069497	-
GWHAAZE00000008	mRNA	7064360	7069497	-
GWHAAZE00000008	exon	7064360	7064567	-
GWHAAZE00000008	exon	7065290	7065328	-
GWHAAZE00000008	exon	7066674	7066751	-
GWHAAZE00000008	exon	7067053	7067118	-
GWHAAZE00000008	exon	7067182	7067327	-
GWHAAZE00000008	exon	7067438	7067688	-
GWHAAZE00000008	exon	7069266	7069497	-
GWHAAZE00000008	CDS	7069266	7069497	-
GWHAAZE00000008	CDS	7067438	7067688	-
GWHAAZE00000008	CDS	7067182	7067327	-
GWHAAZE00000008	CDS	7067053	7067118	-
GWHAAZE00000008	CDS	7066674	7066751	-
GWHAAZE00000008	CDS	7065290	7065328	-
GWHAAZE00000008	CDS	7064360	7064567	-

Transcript Sequence
>GWHTAAZE026624 ATGGTGTCTGCAGCAATTGCCACGTGCAGAGATCGGACCGCAGAATTCCGATCATTATCTGAAACATTGAAGAAGATCGGTGGCATCTCAGCTCCGCTCAGATCCCATACCGATCCTTCTACATCCAAATCTCCCGAAACTTCTTCCTACCGATCTGAATTCAACAAAAAAGCTTCCCGCATCGGTTTAGGCATCCACGAGACTTCCTTGAAGATTTCCAGGCTCGCCAAATTAGCAAAAAGGTCATCGATTTTTGATGATCCAATGAAGGAGATTCAGGAACTGACAGCCTTAATAAAAGAGGACATTACAGCACTTAATGTAGCAGTTTCTGATTTGCAAACCCTTCAAAACATGGAGATGGCTGATGGAAATTATTCTGAAGATAGAGTTGTTCATTCTACTGCTGTATTTGATGATTTGAAGAAAAAGCTCATGGGTGCTACAAAACAGTTCCAGGATGTATTAACTACTAGAACAGAGAATATCAAAGCTCATGAGAATAGGAAACAGATATTTTCCACCAATGTTTCAAGGGAGAACCCTCTAAGGCAGCAAACAAACACTGTAACAGAGCCACCGCCTTGGTCAAGTCCATCTAATTCATCAGGGAGTTTGCAACCATCAGCAAAGAAAAATATTCTGGACAGTATTAGCATACCATTGCTTGTTCAACATCGTAATGAGGCAGGCAGAACCTTGTTGCTAGTTGCTACCCAGACTGATTCGATAGCCATGATAGCTGTGCCCCCTTCAACACAAGTTGTGGGCCTATCAACGTCAAATGGAGTTCAAGTTGGCAACCAACTTAGACGGAGGTTGGCCACCGATAACACTCCCTTCAATAATACAGATGGATCCATGTTGCAGCAGGTGGTGCCGCGGCAAGAGAATTATACGCAAAGTCGGGCAGTTGCCCTTCAGAATGTGGAATCAACAATTTCAGAACTTGGTGGGATTTTCACACATTTGGCTACAATGGTTGCAACTCAAGGGGAATTGGCCATCAGGTTTGCTTAA

Network for GWHGAAZE026590

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11416.9	Syntaxin-5_N	4	25	1.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08490	STX5	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.245
	SRR3591706	second leaf	6.750
	SRR3591707	mature leaf	5.440
	SRR3591708	Shoot apex	12.617
	SRR3591709	Stem	22.298
	SRR3591710	White floral bud	21.437
	SRR3591711	White flower	18.210
	SRR3591712	Green floral bud	21.913
	SRR3591713	Yellow flower	22.990
SRP173429	SRR8316895	Juvenile bud stage	8.908
	SRR8316896	Juvenile bud stage	19.083
	SRR8316897	Juvenile bud stage	9.116
	SRR8316894	Third green stage	6.358
	SRR8316900	Third green stage	18.651
	SRR8316901	Third green stage	21.818
	SRR8316898	Complete white stage	9.419
	SRR8316899	Complete white stage	24.014
	SRR8316903	Complete white stage	10.956
	SRR8316902	Silver flowering stage	9.845
	SRR8316904	Silver flowering stage	10.797
	SRR8316905	Silver flowering stage	5.294
	SRR8316906	Gold flowering stage	24.325
	SRR8316907	Gold flowering stage	17.934
	SRR8316908	Gold flowering stage	16.668
SRP132670	SRR6706286	Control	16.221
	SRR6706287	Light intensity 50%	17.013
	SRR6706288	Light intensity 20%	15.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.592
	CNS0095593	Slightly white alabastrum(diploid) 2	17.757
	CNS0095594	Slightly white alabastrum(diploid) 3	18.246
	CNS0095595	Whole white alabastrum(diploid) 2	21.813
	CNS0095596	Whole white alabastrum(diploid) 3	21.774
	CNS0095597	Whole white alabastrum(diploid) 4	28.407
	CNS0095598	Silvery flower (diploied) 1	11.738
	CNS0095599	Silvery flower (diploied) 2	9.421
	CNS0095600	Silvery flower (diploied) 3	18.714
	CNS0095601	Golden flower (diploid) 1	11.332
	CNS0095602	Golden flower (diploid) 2	19.382
	CNS0095603	Golden flower (diploid) 3	16.717
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.635
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.240
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.361
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.714
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.752
	CNS0095610	Silvery flower (diploied) 1	7.859
	CNS0095611	Silvery flower (diploied) 2	8.786
	CNS0095612	Silvery flower (diploied) 3	12.048
	CNS0095613	Golden flower (tetraploid) 1	6.045
	CNS0095614	Golden flower (tetraploid) 2	7.081
	CNS0095615	Golden flower (tetraploid) 3	13.585
CRA001975	CRR073297	Stem 1	18.191
	CRR073298	Stem 2	15.578
	CRR073299	Stem 3	19.106
	CRR073300	Leaf 1	26.953
	CRR073301	Leaf 2	23.216
	CRR073302	Leaf 3	22.695
	CRR073303	Juvenile bud 1	22.503
	CRR073304	Juvenile bud 2	21.013
	CRR073305	Juvenile bud 3	13.862
	CRR073306	Third green 1	14.559
	CRR073307	Third green 2	15.842
	CRR073308	Third green 3	12.170
	CRR073309	Second white 1	13.301
	CRR073310	Second white 2	15.878
	CRR073311	Second white 3	12.355
	CRR073312	Silver flowering 1	13.420
	CRR073313	Silver flowering 2	14.055
	CRR073314	Silver flowering 3	11.964
	CRR073315	Gold flowering 1	10.137
	CRR073316	Gold flowering 2	13.329
	CRR073317	Gold flowering 3	8.229
	CRR073318	Tawny withering 1	19.797
	CRR073319	Tawny withering 2	21.970
	CRR073320	Tawny withering 3	20.106