Gene detail

Detail information of GWHGAAZE026625

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011084999.1	0	PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 3 isoform X1 [Sesamum indicum]
COG	YP_003901943.1	8E-39	bis(5'-nucleosyl)-tetraphosphatase
Swissprot	tr\|O04858\|PP13_TOBAC	0	Serine/threonine-protein phosphatase PP1 isozyme 3
trEMBL	tr\|M1A8S7\|M1A8S7_SOLTU	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT2G39840.1	6E-162	type one serine/threonine protein phosphatase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7665938	7671134	+
GWHAAZE00000008	mRNA	7665938	7671134	+
GWHAAZE00000008	exon	7665938	7666151	+
GWHAAZE00000008	exon	7669406	7669965	+
GWHAAZE00000008	exon	7670946	7671134	+
GWHAAZE00000008	CDS	7665938	7666151	+
GWHAAZE00000008	CDS	7669406	7669965	+
GWHAAZE00000008	CDS	7670946	7671134	+

Transcript Sequence
>GWHTAAZE026659 ATGGACCCTGCAGCCGTTGATAGGATAATCGAACGGCTAATCGAAGTCAGAACTTCAAAGCCAGGGAAGCTTGTGCAACTCTCTGAATCTGAAATCAAGCAGCTTTGTGTTGCCTCTCGCGATATCTTCTTCAATCAGCCCAATCTTCTTGAACTTGAAGCACCGATCAAGATTTGTGGTACCCTTCTTCTATTTTATTTGACTATCTTATTGTGTGACATTCATGGGCAATACAGTGACCTTCTAAGGCTTTTCGAGTACGGGGGTTTCCCTCCTCAGTCAAATTATCTGTTCTTAGGGGACTATGTAGATCGGGGCAGGCAGAGTTTAGAAACAATATGCCTCTTACTTGCCTATAAAATCAAATACCCTGAGAACTTCTTTCTTCTAAGAGGAAACCACGAATGTGCCTCTATTAATAGGATTTATGGATTTTACGACGAATGTAAGCGCCGGTTTAGTGTGAAACTGTGGAAGAGCTTCACTGACTGCTTTAATTGTCTGCCCGTGGCGGCTCTAATCGATGACAAGATATTGTGCATGCATGGCGGTCTTTCCCCTGATCTTACAGATATGGATGAAATTAGAAAGTTGCCACGTCCAACTGCTATACCTGACACTGGGTTGCTCTGTGATTTACTTTGGTCAGATCCTAGTAAGGATGTCAAAGGATGGGGAATGAATGATCGAGGAGTTTCATTCACGTTCGGACCGGATAAGGTGTCAGAGTTCTTAACAAGGCATGATTTGGATCTTGTTTGTCGTGCCCATCAGGTTGTTGAGGATGGTTATGAGTTCTTTGCCGACAGGCAGCTTGTTACCATATTCTCGGCCCCCAACTACTGCGGTGAATTTGATAATGCTGGTGCAATGATGAGTGTTGATGAAAACTTGATTTGCTCTTTCCAGATTCTTAAGCCAGCGGAGAAAAAGAATAAGTTTATGTTGTCCACAAAAATGTGA

Network for GWHGAAZE026625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16891.6	STPPase_N	6	53	4.20E-20
PF00149.29	Metallophos	73	259	9.50E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.206
	SRR3591706	second leaf	18.241
	SRR3591707	mature leaf	24.390
	SRR3591708	Shoot apex	23.725
	SRR3591709	Stem	35.240
	SRR3591710	White floral bud	40.467
	SRR3591711	White flower	57.029
	SRR3591712	Green floral bud	38.236
	SRR3591713	Yellow flower	45.614
SRP173429	SRR8316895	Juvenile bud stage	25.469
	SRR8316896	Juvenile bud stage	38.689
	SRR8316897	Juvenile bud stage	15.851
	SRR8316894	Third green stage	17.785
	SRR8316900	Third green stage	66.711
	SRR8316901	Third green stage	56.954
	SRR8316898	Complete white stage	36.361
	SRR8316899	Complete white stage	85.440
	SRR8316903	Complete white stage	53.970
	SRR8316902	Silver flowering stage	26.036
	SRR8316904	Silver flowering stage	41.845
	SRR8316905	Silver flowering stage	19.973
	SRR8316906	Gold flowering stage	59.516
	SRR8316907	Gold flowering stage	53.457
	SRR8316908	Gold flowering stage	54.248
SRP132670	SRR6706286	Control	55.031
	SRR6706287	Light intensity 50%	55.915
	SRR6706288	Light intensity 20%	59.350
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.139
	CNS0095593	Slightly white alabastrum(diploid) 2	26.165
	CNS0095594	Slightly white alabastrum(diploid) 3	24.849
	CNS0095595	Whole white alabastrum(diploid) 2	25.560
	CNS0095596	Whole white alabastrum(diploid) 3	25.648
	CNS0095597	Whole white alabastrum(diploid) 4	24.325
	CNS0095598	Silvery flower (diploied) 1	25.948
	CNS0095599	Silvery flower (diploied) 2	24.893
	CNS0095600	Silvery flower (diploied) 3	76.706
	CNS0095601	Golden flower (diploid) 1	24.852
	CNS0095602	Golden flower (diploid) 2	58.706
	CNS0095603	Golden flower (diploid) 3	58.809
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.702
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.772
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.296
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.814
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.324
	CNS0095610	Silvery flower (diploied) 1	64.666
	CNS0095611	Silvery flower (diploied) 2	63.225
	CNS0095612	Silvery flower (diploied) 3	66.654
	CNS0095613	Golden flower (tetraploid) 1	38.636
	CNS0095614	Golden flower (tetraploid) 2	53.319
	CNS0095615	Golden flower (tetraploid) 3	58.432
CRA001975	CRR073297	Stem 1	61.896
	CRR073298	Stem 2	54.485
	CRR073299	Stem 3	74.939
	CRR073300	Leaf 1	78.226
	CRR073301	Leaf 2	64.892
	CRR073302	Leaf 3	80.275
	CRR073303	Juvenile bud 1	82.929
	CRR073304	Juvenile bud 2	69.311
	CRR073305	Juvenile bud 3	82.677
	CRR073306	Third green 1	65.559
	CRR073307	Third green 2	57.749
	CRR073308	Third green 3	68.264
	CRR073309	Second white 1	69.427
	CRR073310	Second white 2	64.169
	CRR073311	Second white 3	54.420
	CRR073312	Silver flowering 1	48.255
	CRR073313	Silver flowering 2	48.350
	CRR073314	Silver flowering 3	38.368
	CRR073315	Gold flowering 1	36.713
	CRR073316	Gold flowering 2	34.947
	CRR073317	Gold flowering 3	37.715
	CRR073318	Tawny withering 1	56.184
	CRR073319	Tawny withering 2	48.037
	CRR073320	Tawny withering 3	43.218