Gene detail

Detail information of GWHGAAZE026647

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010658537.1	PREDICTED: probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [Vitis vinifera]
COG	YP_002248472.1	phosphoribosylformylglycinamidine synthase
Swissprot	tr\|Q9M8D3\|PUR4_ARATH	Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|M5VK84\|M5VK84_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01534.1}
TAIR10	AT1G74260.1	purine biosynthesis 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8059170	8063222	+
GWHAAZE00000008	mRNA	8059170	8063222	+
GWHAAZE00000008	exon	8059170	8063222	+
GWHAAZE00000008	CDS	8059170	8063222	+

Transcript Sequence
>GWHTAAZE026681 ATGACAGTCAGAGCTGTAGTCTCAGACGTCAGCAGTTCAGTAGGTGAGGAAGCGAAAAACTTTTCAGCAGAAAGGGTGATACATTTCTACCGAATTCCATTGATTCAAGAGAGTGCAAATTCCGAACTTCTTAAGTCAGTTCAGAAGAAAATTTCGAATCTAGTAATTGATTTAAAGACAGAACAGTGTTTCAATGTTGGGGTTAAGTCGCATCTATCCACAGAGAAACTCTCCGTGCTTAAATGGCTTCTTCAAGAAACATTTGAGCCCGAAAATTTGGGGACTGAGAGCTTCCTTCATAAGGACAAAAAGGAAGATTCTGATACAGTTATAGTAGAAGTTGGCCCTCGCTTGTCTTTCACTACAGCTTGGTCTACAAATGCTGTATCAATTTGCCAAGCATGTGGGTTGACCGAAGTGACTAGAATGGAACGCTCGAGGAGGTACTTGTTGTATATTAAACCTGGAAGTGGTTCATTGCCAGATAATCAAATTAAGGAGTTTGCAGCTATGGTGCACGATCGAATGACCGAGTGTGTTTATATGAAGAGGCTGACATCCTTTGAGACAAGCTTAGTTCCAGAAGAGGTTCGATATATACCAGTTATGGAGAAGGGTCGAAAGGCATTGGAAGAAATTAACGAAGAAATGGGGTTGGCATTTGACGAGCAAGATCTACAATATTACACACAGCTGTTTAGGGATGACATTAAGCGGGACCCAACAAATGTTGAGCTTTTTGATATTGCACAGTCTAACAGTGAGCACAGCAGGCACTGGTTTTTCACCGGGAAGATTGTTATTGACGGTGAGCTCGTGAATAGGACATTGATGCAGATTGTTAAGAGCACTTTGCAAGCCAACCCTAACAATTCGGTCATTGGGTTCAAGGACAACTCTAGTGCAATCAAAGGGTTTCTAGTGAATCAGTTGCGGCCGGTTCAGCCCGGTTCAACGTGCCCCTACAGCTTAAGTACTCGTGATTTGGCTATCTTGTTCACAGCTGAGACCCACAATTTCCCATGTGCTGTGGCACCGTACCCTGGTGCAGAGACGGGTGCAGGGGGGCGAATTAGGGATACCCATGCAACTGGAAGAGGGTCTTTGGTTGTGGCATCTACAGCCGGTTACTGTGTTGGGAATCTAAATATCGAAGGGTCTAATGCTCCGTGGGAAGATCCATCGTTCACTTACCCATCAAACTTGGCTTCCCCTCTGCATATACTTATTGATGCTAGCAACGGTGCATCGGATTATGGTAACAAGTTTGGAGAGCCATTGATTCAGGGCTACACAAGAACTTTTGGAATGAGACTACCATGCGGGGAAAGACGAGAGTGGTTGAAGCCGATTATGTTCAGTGCGGGTATTGGGCAGATTGATCAAACCCACTTAACAAAAGGAGAGCCCGATATTGGAATGCTAGTTGTAAAGATTGGTGGCCCCGCATATCGGATAGGAATGGGAGGTGGTGCTGCCTCGAGCATGGTTAGTGGCCAGAATGATGCTGAGCTTGATTTTAACGCTGTACAACGCGGTGATGCAGAGATGGCACAGAAGTTGTACCGTGTCGTTCGTGCTTGTGTTGAAATGGGAGAGGGCAACCCAATCATCAGCATTCATGATCAGGGTGCCGGTGGTAATTGTAACGTTGTTAAGGAAATAATATACCCAAAGGGTGCTAACATTGATATTAGGGCGATTGTTGTAGGCGACCACACAATGTCCATATTGGAGATATGGGGTGCAGAATATCAAGAGCAAGATGCAATTCTAGTGAAGCCCGAAAGCAGAAACCTCTTGCATTCAATCTGTAAAAGAGAAAGGGTCTCTATGGCGGTTCTTGGAACAATTAGTGGTGAGGGACGCATTCGATTAATTGACAGTTTTGCGATTGAAAGGTGTCATTCAGGCAAACTCCCTCCCCCTCCACCTGCTGTGGATCTTGAACTCGAGAAAGTTCTAGGTGATATGCCTCAAAAAACTTTTGAATTCCATCGCGTGGTTAACGCGCGCAAGTCGCTCGACATTGCTCCTGGGGTAACGGTGATGGATTCTCTTAAGAGGGTATTGAGACTTCCTTCTATTTGTTCGAAACGCTTCTTGACGACTAAGGTTGATAGGTGTGTAACGGGCCTCGTTGCTCAGCAGCAAACTGTGGGTCCCCTTCAAATTCCTCTATCTGATGTTGCAGTTATCGCACAAACTTATACCGACTTCACTGGGGGAGCGTGTGCGATTGGCGAGCAGCCAATCAAGGGCCTGCTTGATCCAAAAGCAATGGCTCGTTTGGCTGTTGGTGAAGCTCTTACGAATCTTGTTTGGGCTAAAGTTACTTCTCTCTCTGATGTGAAAGCGAGTGGGAATTGGATGTATGCTGCTAAACTTGATGGTGAAGGAGCGGCCATGTACGATGCCGCCATAGCTCTTTCGGAAGCTATGATAGAACTCGAAATTGCTATTGATGGGGGAAAAGACAGTCTTTCTATGGCAGCACATTCATCGGGGGAAGTTGTAAAGGCTCCCGGGAACCTCGTTGTCAGTGCCTACGTCACGTGTCCCGATATAACCAAAACCGTTACCCCGGATTTGAAACTCGAAGATGAGGGTATACTTCTTCACATCGACTTGGCTAAAGGGAAGCGCCGTCTAGGTGGCTCTGCTCTTGCTCAGGTGTTTAACCAAGTTGGGAATGAATGTCCGGATCTTGATGATATTCCTTACTTTAAAAGGGTTTTCAAGGGGGTTCAAGTTCTTCTTGCAGATGAACTTATCTCAGCTGGTCATGATATTAGTGACGGGGGCATTCTTGTCAGCACCCTGGAGATGGCTTTTGCAGGGAACTGCGGAATTCGCTTAGAATTGAATTCCCAAGGGTATAGCCTCTTCCAAACACTTTTTGCAGAAGAACTCGGTCTTATTCTCGAAGTGAGCAAGAAAAACTTTGAAGTTGTGACCTCTAAGCTTCGCAATTTTGGTATTTCCGCTGAAATCATTGGACAAGTAACTTCTGAGCCCATGGTGGGACTTAAAGTTGATGGGGTTACCCATTTAAACGAAAAAACTTCTGATCTTAGGGACATGTGGGAAGAAACCAGTTTTCTTCTTGAAAGGTTCCAAAGATTGGCTTCTTGTGTGGATTTAGAGAAAGAAGGGTTAAAGAATCGACACAAACCTTCATGGAAATTGTCCTTCGCTCCATTGTTTACAGATGAGAAGTATATTACTGCCATTTCGAAACCAAAGGTAGCCGTTATTCGAGAAGAAGGTAGCAACGGGGACAGAGAAATGGCTGCAGCATTTTCTGCTGCAGGCTTTGAACCATGGGATGTTACAATGTCAGACCTTCTTAATGGATCAACCACTCTCCGTGGATTTCGTGGGATTGTTTTTGTGGGCGGTTTTAGCTACGCTGATGTTCTTGATTCTGCCAAAGGCTGGTCCGCTTCTATACGGTTCAACCAACCCCTCCTAAATCAATTTCAAGAATTTTATAACCGGCCCGACACTTTCAGCCTCGGGGTCTGCAACGGGTGCCAGCTTATGGCCCTGCTGGGTTGGGTCCCTGGTCCCCAAGTTGGTGGTGTTCTCAGTAATGGTGGCGACCCATCACAATCAAGATTTGTACACAACAAATCTGGACAGTTTGAATGCCGGTTCACGAGTGTGTCGATAAATGACTCACCAGCTATAATGTTCAAAGGAATGGAAGGGAGTACGTTGGGGGTGTGGGCTGCTCATGGTGAGGGTAGAGCTTATTTTCCTGATAACGGGGTATTAAATCATGTTCTTGATTTGAACTTGGCCCCAGTGAGATATTGTGATGATGATGGGAAGATAACGGAAGAGTACCCGTTTAATCTAAACGGGTCTCCGTTGGGTGTGGCGGCGATTTGTTCGCCGGATGGGAGACATTTGGCTATGATGCCTCATCCGGAGCGGTGTTTCTTGATGTGGCAGTTCCCGTGGTACCCGAGGAATTGGGATTTGGAGAAGAGAGGGCCAAGCCCGTGGTTGAAGATGTTCCAAAACGCCAGAGAGTGGTGCTCATGA

Network for GWHGAAZE026647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18076.2	FGAR-AT_N	63	183	5.30E-20
PF18072.2	FGAR-AT_linker	210	259	1.40E-11
PF02769.23	AIRS_C	473	627	1.70E-21
PF02769.23	AIRS_C	883	1012	1.10E-14
PF13507.7	GATase_5	1080	1349	9.10E-105

Protein Sequence

>GWHPAAZE026665
MTVRAVVSDVSSSVGEEAKNFSAERVIHFYRIPLIQESANSELLKSVQKKISNLVIDLKTEQCFNVGVKSHLSTEKLSVLKWLLQETFEPENLGTESFLHKDKKEDSDTVIVEVGPRLSFTTAWSTNAVSICQACGLTEVTRMERSRRYLLYIKPGSGSLPDNQIKEFAAMVHDRMTECVYMKRLTSFETSLVPEEVRYIPVMEKGRKALEEINEEMGLAFDEQDLQYYTQLFRDDIKRDPTNVELFDIAQSNSEHSRHWFFTGKIVIDGELVNRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFLVNQLRPVQPGSTCPYSLSTRDLAILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSLVVASTAGYCVGNLNIEGSNAPWEDPSFTYPSNLASPLHILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPCGERREWLKPIMFSAGIGQIDQTHLTKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRVVRACVEMGEGNPIISIHDQGAGGNCNVVKEIIYPKGANIDIRAIVVGDHTMSILEIWGAEYQEQDAILVKPESRNLLHSICKRERVSMAVLGTISGEGRIRLIDSFAIERCHSGKLPPPPPAVDLELEKVLGDMPQKTFEFHRVVNARKSLDIAPGVTVMDSLKRVLRLPSICSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLSDVAVIAQTYTDFTGGACAIGEQPIKGLLDPKAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGAAMYDAAIALSEAMIELEIAIDGGKDSLSMAAHSSGEVVKAPGNLVVSAYVTCPDITKTVTPDLKLEDEGILLHIDLAKGKRRLGGSALAQVFNQVGNECPDLDDIPYFKRVFKGVQVLLADELISAGHDISDGGILVSTLEMAFAGNCGIRLELNSQGYSLFQTLFAEELGLILEVSKKNFEVVTSKLRNFGISAEIIGQVTSEPMVGLKVDGVTHLNEKTSDLRDMWEETSFLLERFQRLASCVDLEKEGLKNRHKPSWKLSFAPLFTDEKYITAISKPKVAVIREEGSNGDREMAAAFSAAGFEPWDVTMSDLLNGSTTLRGFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGVLSNGGDPSQSRFVHNKSGQFECRFTSVSINDSPAIMFKGMEGSTLGVWAAHGEGRAYFPDNGVLNHVLDLNLAPVRYCDDDGKITEEYPFNLNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPRNWDLEKRGPSPWLKMFQNAREWCS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01952	PFAS, purL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0006189	biological_process	'de novo' IMP biosynthetic process
GO:0004642	molecular_function	phosphoribosylformylglycinamidine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.836
	SRR3591706	second leaf	7.852
	SRR3591707	mature leaf	6.697
	SRR3591708	Shoot apex	10.935
	SRR3591709	Stem	10.624
	SRR3591710	White floral bud	11.053
	SRR3591711	White flower	15.505
	SRR3591712	Green floral bud	14.691
	SRR3591713	Yellow flower	10.244
SRP173429	SRR8316895	Juvenile bud stage	10.028
	SRR8316896	Juvenile bud stage	14.047
	SRR8316897	Juvenile bud stage	5.935
	SRR8316894	Third green stage	6.182
	SRR8316900	Third green stage	19.508
	SRR8316901	Third green stage	15.283
	SRR8316898	Complete white stage	3.143
	SRR8316899	Complete white stage	15.705
	SRR8316903	Complete white stage	7.472
	SRR8316902	Silver flowering stage	5.628
	SRR8316904	Silver flowering stage	9.346
	SRR8316905	Silver flowering stage	4.165
	SRR8316906	Gold flowering stage	11.127
	SRR8316907	Gold flowering stage	12.275
	SRR8316908	Gold flowering stage	13.084
SRP132670	SRR6706286	Control	18.285
	SRR6706287	Light intensity 50%	18.857
	SRR6706288	Light intensity 20%	20.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.306
	CNS0095593	Slightly white alabastrum(diploid) 2	9.006
	CNS0095594	Slightly white alabastrum(diploid) 3	8.363
	CNS0095595	Whole white alabastrum(diploid) 2	8.523
	CNS0095596	Whole white alabastrum(diploid) 3	10.331
	CNS0095597	Whole white alabastrum(diploid) 4	6.050
	CNS0095598	Silvery flower (diploied) 1	10.625
	CNS0095599	Silvery flower (diploied) 2	9.087
	CNS0095600	Silvery flower (diploied) 3	20.070
	CNS0095601	Golden flower (diploid) 1	6.712
	CNS0095602	Golden flower (diploid) 2	16.862
	CNS0095603	Golden flower (diploid) 3	16.723
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.001
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.753
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.387
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.713
	CNS0095610	Silvery flower (diploied) 1	19.886
	CNS0095611	Silvery flower (diploied) 2	18.027
	CNS0095612	Silvery flower (diploied) 3	14.596
	CNS0095613	Golden flower (tetraploid) 1	5.769
	CNS0095614	Golden flower (tetraploid) 2	14.912
	CNS0095615	Golden flower (tetraploid) 3	9.161
CRA001975	CRR073297	Stem 1	18.454
	CRR073298	Stem 2	16.507
	CRR073299	Stem 3	14.683
	CRR073300	Leaf 1	20.122
	CRR073301	Leaf 2	18.343
	CRR073302	Leaf 3	16.350
	CRR073303	Juvenile bud 1	18.854
	CRR073304	Juvenile bud 2	10.575
	CRR073305	Juvenile bud 3	25.744
	CRR073306	Third green 1	3.779
	CRR073307	Third green 2	4.021
	CRR073308	Third green 3	4.755
	CRR073309	Second white 1	6.425
	CRR073310	Second white 2	6.321
	CRR073311	Second white 3	7.679
	CRR073312	Silver flowering 1	7.292
	CRR073313	Silver flowering 2	7.610
	CRR073314	Silver flowering 3	7.242
	CRR073315	Gold flowering 1	9.112
	CRR073316	Gold flowering 2	14.825
	CRR073317	Gold flowering 3	10.200
	CRR073318	Tawny withering 1	10.243
	CRR073319	Tawny withering 2	8.878
	CRR073320	Tawny withering 3	11.213