Gene detail

Detail information of GWHGAAZE026678

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN79495.1	1.68965E-82	hypothetical protein VITISV_020749 [Vitis vinifera]
Swissprot	tr\|Q9M2U1\|DOF36_ARATH	2E-54	Dof zinc finger protein DOF3.6
trEMBL	tr\|A5BZE7\|A5BZE7_VITVI	6E-83	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79495.1}
TAIR10	AT3G55370.2	2E-41	OBF-binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8523555	8524533	-
GWHAAZE00000008	mRNA	8523555	8524533	-
GWHAAZE00000008	exon	8523555	8524406	-
GWHAAZE00000008	exon	8524483	8524533	-
GWHAAZE00000008	CDS	8524483	8524533	-
GWHAAZE00000008	CDS	8523555	8524406	-

Transcript Sequence
>GWHTAAZE026712 ATGATCTTCTCATCCCTTCCAATATATCAAGATCCTCCTATTTGGCAACAGCAACAAGAAGGCGATAGCGGGGAGGACTACCCTCGGCTAGTTTCCCCAGTGACAACGCCACCCCCACTTGGTGGTGATGGCACTGGTAGCAGTTCAGCCAAGGTTGGCTCGATGACAGAGCGAGCCAGGCTTGCCAAGCTGCCAATGCCAGAAAAAGGCCTGAAATGTCCAAGATGCGAATCCACCAACACGAAATTTTGCTACTTCAATAATTATAGCTTGTCACAACCACGCCACTTTTGCAAGACTTGCCGCAAATACTGGACCCGAGGCGGAACCCTAAGGAGCGTACCACTTGGAGGAGGCTGCCGGAGGGACAACAAGAGGAGCAAAGCAAGTACCAAATCCAAATCCCCAGTCACAAACTCAACCAACTCCTCTAGTAGCTGCACGACCAGTAATATTATACAACACATCTTACCACCACCATCACAAATACCTTTTTGCCCCTCTTTGCAACATCTTAGCAATTATGGAGACGATGGTGGCGTTGGGTTGACTTTCGGGAGTATTCTGTTGCCGTCCCTGCAGGCTGCAGCGGCGGCAACTGAATTCCAAATTGGTGAGCAATGGAGGCTTGAACAAGCACAACAACTTCCTTTTATGGAACCATCAAATGGGGTTTACCAATTTGAGGAGGGTGAGGGTGTTGAGGCATCAAATTACCATCTTCGGGCAAAGCCACCTTTATGTTCAGAGGTTACTCAGCTTGGTTTGATGACGATGGAAGAAAGTAAGGGGGTAAATTTGTCAAGGTTTAATCAAGGGAATGATCAGAATTTGGGTGCCAATGCATGGACTGATCTCCATGGTTTCTTGAGCACTTCTTCATCCAGTAGCCATCTCTTATAA

Network for GWHGAAZE026678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	70	125	1.60E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.462
	SRR3591706	second leaf	5.677
	SRR3591707	mature leaf	6.468
	SRR3591708	Shoot apex	8.108
	SRR3591709	Stem	3.592
	SRR3591710	White floral bud	7.383
	SRR3591711	White flower	1.877
	SRR3591712	Green floral bud	13.932
	SRR3591713	Yellow flower	0.212
SRP173429	SRR8316895	Juvenile bud stage	3.492
	SRR8316896	Juvenile bud stage	5.812
	SRR8316897	Juvenile bud stage	1.750
	SRR8316894	Third green stage	2.981
	SRR8316900	Third green stage	11.216
	SRR8316901	Third green stage	8.802
	SRR8316898	Complete white stage	1.346
	SRR8316899	Complete white stage	9.531
	SRR8316903	Complete white stage	3.773
	SRR8316902	Silver flowering stage	0.897
	SRR8316904	Silver flowering stage	0.590
	SRR8316905	Silver flowering stage	0.088
	SRR8316906	Gold flowering stage	0.395
	SRR8316907	Gold flowering stage	0.812
	SRR8316908	Gold flowering stage	0.551
SRP132670	SRR6706286	Control	8.668
	SRR6706287	Light intensity 50%	9.547
	SRR6706288	Light intensity 20%	10.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.665
	CNS0095593	Slightly white alabastrum(diploid) 2	6.447
	CNS0095594	Slightly white alabastrum(diploid) 3	5.452
	CNS0095595	Whole white alabastrum(diploid) 2	4.985
	CNS0095596	Whole white alabastrum(diploid) 3	5.320
	CNS0095597	Whole white alabastrum(diploid) 4	4.251
	CNS0095598	Silvery flower (diploied) 1	3.959
	CNS0095599	Silvery flower (diploied) 2	2.257
	CNS0095600	Silvery flower (diploied) 3	0.445
	CNS0095601	Golden flower (diploid) 1	1.026
	CNS0095602	Golden flower (diploid) 2	2.190
	CNS0095603	Golden flower (diploid) 3	1.510
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.657
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.262
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.690
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.350
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.610
	CNS0095610	Silvery flower (diploied) 1	0.413
	CNS0095611	Silvery flower (diploied) 2	0.676
	CNS0095612	Silvery flower (diploied) 3	0.331
	CNS0095613	Golden flower (tetraploid) 1	0.077
	CNS0095614	Golden flower (tetraploid) 2	0.154
	CNS0095615	Golden flower (tetraploid) 3	0.186
CRA001975	CRR073297	Stem 1	3.353
	CRR073298	Stem 2	6.677
	CRR073299	Stem 3	9.114
	CRR073300	Leaf 1	9.998
	CRR073301	Leaf 2	9.608
	CRR073302	Leaf 3	7.760
	CRR073303	Juvenile bud 1	10.781
	CRR073304	Juvenile bud 2	6.675
	CRR073305	Juvenile bud 3	9.310
	CRR073306	Third green 1	1.289
	CRR073307	Third green 2	1.467
	CRR073308	Third green 3	2.244
	CRR073309	Second white 1	0.064
	CRR073310	Second white 2	0.216
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.384
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.702
	CRR073316	Gold flowering 2	3.509
	CRR073317	Gold flowering 3	3.422
	CRR073318	Tawny withering 1	11.657
	CRR073319	Tawny withering 2	4.600
	CRR073320	Tawny withering 3	14.594