Detail information of GWHGAAZE026768


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010093189.11.3517E-147Oxygen-evolving enhancer protein 2 [Morus notabilis]
Swissprottr|P29795|PSBP_SOLLC1E-142Oxygen-evolving enhancer protein 2, chloroplastic (Precursor)
trEMBLtr|W9RF48|W9RF48_9ROSA5E-148Oxygen-evolving enhancer protein 2 {ECO:0000313|EMBL:EXB53677.1}
TAIR10AT1G06680.16E-100photosystem II subunit P-1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene98827489885636-
GWHAAZE00000008mRNA98827489885636-
GWHAAZE00000008exon98827489883008-
GWHAAZE00000008exon98834629883512-
GWHAAZE00000008exon98839029884134-
GWHAAZE00000008exon98853549885636-
GWHAAZE00000008CDS98853549885636-
GWHAAZE00000008CDS98839029884134-
GWHAAZE00000008CDS98834629883512-
GWHAAZE00000008CDS98827489883008-
Transcript Sequence

Network for GWHGAAZE026768

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01789.17PsbP1062741.60E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02717psbP Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0009523cellular_componentphotosystem II
GO:0009654cellular_componentphotosystem II oxygen evolving complex
GO:0019898cellular_componentextrinsic component of membrane
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf236.936
SRR3591706second leaf432.813
SRR3591707mature leaf1572.493
SRR3591708Shoot apex260.784
SRR3591709Stem607.237
SRR3591710White floral bud64.503
SRR3591711White flower84.477
SRR3591712Green floral bud31.265
SRR3591713Yellow flower26.523
SRP173429 SRR8316895Juvenile bud stage 107.492
SRR8316896Juvenile bud stage 112.190
SRR8316897Juvenile bud stage 69.128
SRR8316894Third green stage 25.582
SRR8316900Third green stage 39.133
SRR8316901Third green stage 30.772
SRR8316898Complete white stage 11.393
SRR8316899Complete white stage 40.205
SRR8316903Complete white stage 50.862
SRR8316902Silver flowering stage9.040
SRR8316904Silver flowering stage10.563
SRR8316905Silver flowering stage4.734
SRR8316906Gold flowering stage 25.532
SRR8316907Gold flowering stage 30.512
SRR8316908Gold flowering stage 20.487
SRP132670SRR6706286Control118.776
SRR6706287Light intensity 50%77.041
SRR6706288Light intensity 20%68.744
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1141.234
CNS0095593Slightly white alabastrum(diploid) 2104.693
CNS0095594Slightly white alabastrum(diploid) 3134.054
CNS0095595Whole white alabastrum(diploid) 280.957
CNS0095596Whole white alabastrum(diploid) 352.598
CNS0095597Whole white alabastrum(diploid) 477.484
CNS0095598Silvery flower (diploied) 1604.165
CNS0095599Silvery flower (diploied) 2575.253
CNS0095600Silvery flower (diploied) 3196.531
CNS0095601Golden flower (diploid) 1692.554
CNS0095602Golden flower (diploid) 2450.918
CNS0095603Golden flower (diploid) 3461.795
CNS0095604Slightly white alabastrum(tetraploid) 1177.966
CNS0095605Slightly white alabastrum(tetraploid) 2198.125
CNS0095606Slightly white alabastrum(tetraploid) 3256.968
CNS0095607Whole white alabastrum(tetraploid) 1131.638
CNS0095608Whole white alabastrum(tetraploid) 285.675
CNS0095609Whole white alabastrum(tetraploid) 3123.389
CNS0095610Silvery flower (diploied) 1211.248
CNS0095611Silvery flower (diploied) 2535.351
CNS0095612Silvery flower (diploied) 3319.415
CNS0095613Golden flower (tetraploid) 1255.402
CNS0095614Golden flower (tetraploid) 2281.152
CNS0095615Golden flower (tetraploid) 3181.073
CRA001975CRR073297Stem 1281.552
CRR073298Stem 2230.708
CRR073299Stem 3369.978
CRR073300Leaf 171.312
CRR073301Leaf 292.443
CRR073302Leaf 378.540
CRR073303Juvenile bud 154.985
CRR073304Juvenile bud 255.414
CRR073305Juvenile bud 3105.924
CRR073306Third green 124.822
CRR073307Third green 237.157
CRR073308Third green 332.575
CRR073309Second white 142.774
CRR073310Second white 279.782
CRR073311Second white 357.644
CRR073312Silver flowering 1163.153
CRR073313Silver flowering 2165.443
CRR073314Silver flowering 3173.608
CRR073315Gold flowering 11312.393
CRR073316Gold flowering 21383.563
CRR073317Gold flowering 31378.600
CRR073318Tawny withering 1560.638
CRR073319Tawny withering 2533.320
CRR073320Tawny withering 3414.833