Gene detail

Detail information of GWHGAAZE026827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFQ93695.1	0	acyl-CoA oxidase 3 [Prunus persica]
COG	YP_005372970.1	3E-141	putative acyl-CoA dehydrogenase
Swissprot	tr\|P0CZ23\|ACOX3_ARATH	0	Acyl-coenzyme A oxidase 3, peroxisomal (Precursor)
trEMBL	tr\|J7KBI6\|J7KBI6_PRUPE	0	Acyl-coenzyme A oxidase {ECO:0000256\|PIRNR:PIRNR000168}
TAIR10	AT1G06290.1	0	acyl-CoA oxidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10660843	10668313	+
GWHAAZE00000008	mRNA	10660843	10668313	+
GWHAAZE00000008	exon	10660843	10661303	+
GWHAAZE00000008	exon	10664296	10664413	+
GWHAAZE00000008	exon	10664507	10664614	+
GWHAAZE00000008	exon	10665029	10665201	+
GWHAAZE00000008	exon	10665320	10665419	+
GWHAAZE00000008	exon	10665776	10665850	+
GWHAAZE00000008	exon	10665967	10666097	+
GWHAAZE00000008	exon	10666300	10666435	+
GWHAAZE00000008	exon	10666777	10666896	+
GWHAAZE00000008	exon	10667234	10667380	+
GWHAAZE00000008	exon	10667462	10667566	+
GWHAAZE00000008	exon	10667703	10667804	+
GWHAAZE00000008	exon	10668065	10668313	+
GWHAAZE00000008	CDS	10660843	10661303	+
GWHAAZE00000008	CDS	10664296	10664413	+
GWHAAZE00000008	CDS	10664507	10664614	+
GWHAAZE00000008	CDS	10665029	10665201	+
GWHAAZE00000008	CDS	10665320	10665419	+
GWHAAZE00000008	CDS	10665776	10665850	+
GWHAAZE00000008	CDS	10665967	10666097	+
GWHAAZE00000008	CDS	10666300	10666435	+
GWHAAZE00000008	CDS	10666777	10666896	+
GWHAAZE00000008	CDS	10667234	10667380	+
GWHAAZE00000008	CDS	10667462	10667566	+
GWHAAZE00000008	CDS	10667703	10667804	+
GWHAAZE00000008	CDS	10668065	10668313	+

Transcript Sequence
>GWHTAAZE026861 ATGGATCAATTCAACTTTCGAACTCAAATCCTGGCCGGACACCTCATCCGGCCATCTGTTTCACCACCGCCACCTCTCCAATCCACCATCTGCCTAGCCTACTCCCCGCCGGAGCTTTCCGAGACGTTCGATTTCGACACAAAATCGATGCGAAAGCTAATGGACGGCCACAATTTGGAAGACAGGGACTGGCTGTTCGGTCTAATGATACAGAGCAAGTTGTTTTGCCCTAGAGAGAGGGGAAACAAGGTTTTTGTAGGGGCGGATTATAATCAGTCCATGGAACAGCAGAGAGAGATGACAATGAAGAGAATTCAATACTTGTACGAGCGCGGGGTTTTCGAGGGGTGGTTAACAAAGAAGGGGGTGGAAAGAGAATTGAGGAAGTTTGCGTTTTTGGAAATTATGGCCATTTTTGATCACTCCCTTGCTATTAAGATTGGTGTTCATTTCTTTCTTTGGGGTGGTGCAATCCAGTTTTTTGGCACAAAGCGCCATCATGACAAGTGGTTCAGGGACACTGAAAATTATGTTGTAAAGGGTTGCTTTGCAATGACTGAGTTGGGGCATGGAAGTAATGTCCGAGGCATTGAAACAGTTACTACATACGATTCAAACAATGGAGAGTTTATCATTTCTACTCCATGTGAATCGGCTCAGAAATACTGGATTGGAGGTGCAGCTAATCATTCCACACATACAATAGTTTTCTCACAGCTCAACATTAATGGAATAAATCAAGGGGTCCATGCCTTTATCACCCAGATCAGAGATGCCAATGGCAACATATGTCCAAATGTCCGTGTAGCTGATTGTGGTCATAAAATTGGGTTAAATGGAGTTGATAACGGTCGAATCTGGTTTGACAATGTCCGGATACCTAGAGAGAATTTGTTGAATTCAGTAGCTGATGTTTCTCCAAATGGGCAATATCTGAGTGCGATAAAGGACCCAGATCAGAGATTTGCTGCATTCTTGGCCCCTTTGACTTCTGGTCGTGTAACCATTGCAGTCAGTGCAATTTACTCAGCAAAGATTAGTCTAGCAACAGCCATAAGGTATTCATTGTCAAGGCGTGCATTTTCTGTAACACCAGATGGTCCTGAAGTCCTTGTTCTTGATTATCCGAGTCATCAAAGGCGGTTGTTACCTCTTCTTGCAAAAACATATGCTATGAGTTTTGCCGCTAACTATTTGAAAATGCTATACGTGAAGAGGACGCCTGAGTTGAACAAAACCATTCACGTTGTTTCAAGTGCATTCAAGGCTACATTGACCTGGCATGACATGCGGACTCTTCAGGAATGTCGTGAAGCCTGTGGAGGACAAGGTTTGAAGACTGAAAATCGCATTGGTCATTTAAAAAGCGAGTTTGATGTGCAATCCACTTTTGAGGGGGACAACAATGTTCTTATGCAACAGGTGAGCAAGGCACTTCTTGCGGAATTTGTGGCAGCCAAGAAGCGGAACCAACCATTTAAGGCATTGGGATTAGAACACATGAACAAGTCTTGCCCCGTTATACCATCTCAACCTACAAGCTCTAATATGAGGAGCACGCAGTTCCAGACAGATATCTTCTGCCTAAGAGAGAGAGATCTGTTGAACCGTTTTGCTTCAGAAGTTTCGCAACGCCAAGTGAAAGGAGAAAGCAAAGAATATACATACGCTGTGACTTATCAGCTTGCTGAAGACTTGGGAAGAGCCTTCTCAGACCGGGCAATTCTGCAAACCTTTATAGATGCTGAGGCGACCGTATCTGCTGGGCCTTTGAAGAACGTGTTAGGTCTATTGAGATCCATGTATGCCCTGGTCACCTTGGAAGAAGATGCTGCATTCCTGCGGTATGGCTATTTATCAATGGACAATGCAGCTTCTGTGAGGAATGAAGTGGCTAAACTCTGTGGTGAACTAAGGCCACACGCGCTTGCCTTGGTCAGTTCCTTTGGAATACCTGATGCTTTCTTGGGACCTATTGCGTTTAATTGGGTTGAAGCGAATTCTTGGTCTTCAGTTCAACACTAG

Network for GWHGAAZE026827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02770.20	Acyl-CoA_dh_M	182	291	3.20E-15
PF00441.25	Acyl-CoA_dh_1	324	479	7.90E-10
PF01756.20	ACOX	522	657	5.70E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00232	E1.3.3.6, ACOX1, ACOX3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Propanoate metabolism	map00640
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Biosynthesis of unsaturated fatty acids	map01040
		beta-Alanine metabolism	map00410
		cAMP signaling pathway	map04024
		Peroxisome	map04146
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0006635	biological_process	fatty acid beta-oxidation
GO:0055114	biological_process	oxidation-reduction process
GO:0006631	biological_process	fatty acid metabolic process
GO:0005777	cellular_component	peroxisome
GO:0003997	molecular_function	acyl-CoA oxidase activity
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0071949	molecular_function	FAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.732
	SRR3591706	second leaf	17.136
	SRR3591707	mature leaf	25.145
	SRR3591708	Shoot apex	20.534
	SRR3591709	Stem	19.052
	SRR3591710	White floral bud	132.894
	SRR3591711	White flower	235.037
	SRR3591712	Green floral bud	34.404
	SRR3591713	Yellow flower	444.294
SRP173429	SRR8316895	Juvenile bud stage	30.758
	SRR8316896	Juvenile bud stage	49.801
	SRR8316897	Juvenile bud stage	13.671
	SRR8316894	Third green stage	19.821
	SRR8316900	Third green stage	53.227
	SRR8316901	Third green stage	51.564
	SRR8316898	Complete white stage	56.472
	SRR8316899	Complete white stage	62.684
	SRR8316903	Complete white stage	99.685
	SRR8316902	Silver flowering stage	245.791
	SRR8316904	Silver flowering stage	341.989
	SRR8316905	Silver flowering stage	204.346
	SRR8316906	Gold flowering stage	929.090
	SRR8316907	Gold flowering stage	770.438
	SRR8316908	Gold flowering stage	581.262
SRP132670	SRR6706286	Control	57.206
	SRR6706287	Light intensity 50%	58.934
	SRR6706288	Light intensity 20%	53.715
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.201
	CNS0095593	Slightly white alabastrum(diploid) 2	24.883
	CNS0095594	Slightly white alabastrum(diploid) 3	29.407
	CNS0095595	Whole white alabastrum(diploid) 2	27.435
	CNS0095596	Whole white alabastrum(diploid) 3	27.210
	CNS0095597	Whole white alabastrum(diploid) 4	28.805
	CNS0095598	Silvery flower (diploied) 1	53.057
	CNS0095599	Silvery flower (diploied) 2	54.790
	CNS0095600	Silvery flower (diploied) 3	186.426
	CNS0095601	Golden flower (diploid) 1	73.845
	CNS0095602	Golden flower (diploid) 2	210.005
	CNS0095603	Golden flower (diploid) 3	204.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.764
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.300
	CNS0095610	Silvery flower (diploied) 1	152.114
	CNS0095611	Silvery flower (diploied) 2	158.946
	CNS0095612	Silvery flower (diploied) 3	367.268
	CNS0095613	Golden flower (tetraploid) 1	214.397
	CNS0095614	Golden flower (tetraploid) 2	193.322
	CNS0095615	Golden flower (tetraploid) 3	905.792
CRA001975	CRR073297	Stem 1	47.593
	CRR073298	Stem 2	44.507
	CRR073299	Stem 3	49.546
	CRR073300	Leaf 1	42.244
	CRR073301	Leaf 2	40.253
	CRR073302	Leaf 3	38.933
	CRR073303	Juvenile bud 1	43.481
	CRR073304	Juvenile bud 2	45.865
	CRR073305	Juvenile bud 3	54.742
	CRR073306	Third green 1	561.033
	CRR073307	Third green 2	344.250
	CRR073308	Third green 3	408.259
	CRR073309	Second white 1	742.034
	CRR073310	Second white 2	788.494
	CRR073311	Second white 3	954.548
	CRR073312	Silver flowering 1	865.872
	CRR073313	Silver flowering 2	744.901
	CRR073314	Silver flowering 3	595.446
	CRR073315	Gold flowering 1	23.124
	CRR073316	Gold flowering 2	39.796
	CRR073317	Gold flowering 3	27.529
	CRR073318	Tawny withering 1	31.763
	CRR073319	Tawny withering 2	29.964
	CRR073320	Tawny withering 3	27.530