Gene detail

Detail information of GWHGAAZE026874

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14752.1	1.2208E-126	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SKT1\|ERF53_ARATH	8E-62	Ethylene-responsive transcription factor ERF053
trEMBL	tr\|A0A068V2H9\|A0A068V2H9_COFCA	5E-127	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14752.1}
TAIR10	AT2G20880.1	2E-49	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11390157	11391395	-
GWHAAZE00000008	mRNA	11390157	11391395	-
GWHAAZE00000008	exon	11390489	11391395	-
GWHAAZE00000008	exon	11390157	11390419	-
GWHAAZE00000008	CDS	11390489	11391395	-
GWHAAZE00000008	CDS	11390157	11390419	-

Transcript Sequence
>GWHTAAZE026908 ATGGCTTCAACTAAGAACAGTAGCAAGTCAAAGGCAGCAATGGATCAAGGCGGCAAGGGCTTCGATATAGGTTTTGAGAGGCGGCAATGGAAGACAGTTTTTGATGAAGCTTCCATGTCAAATAAAAGGCCTCTCAAGAAAGTCAAAAGCCCCGAACGCCAACAAAACCAATTTCAATCCTCACCTTCTTTAATGCATCAAACACTTGTACCTTTTCCTCCTCAGCAATCATCATCATCATCTTCCTCCACATCTTCAAGATTGTTCCCATTTGCCTTTGATGGGTCTCAACAATCAATGGAATCTTTAAAGCAATTGAGAACAAACCAGCAAATTCAGCAGCAGATGATTTCTTTTGCTCCCCACCACCACTACCCAATGTACAATCCCCAACAGCACCAGCAGCAGCAGCAGCAGATGTTGCAGTTCTGGAGTGATTCATTGAATTTGAGCCCAAGAGGAAGGATGGCTATGATGAACAGGCTGGGACAGAACAGTGCAACCTTGTTTAGGCCATCATTGATGCCTATTTCACCCACAAAACTCTACAGGGGAGTGAGGCAGAGGCATTGGGGTAAATGGGTGGCTGAGATTCGTCTCCCTCGGAACCGGACCCGCCTCTGGCTCGGCACGTTCGACACTGCGGAGGACGCTGCTATGGCATATGATCGCGAGGCCTTTAAGTTGAGAGGAGAGAATGCTCGGCTTAATTTCCCCGAACGCTTTCTTGGTAAAGAGAAAGCAGGCCCAGCTTCGCCTCCATCACCGCCCCATAAACAGGACATAGAGCGGCCACAAGAAGTTCCAGAAGGACTTAATGAGGAGGCTTCTAGTATGAAACTATCGCCACCGTCAATGCCACTGCCTCGGGTTGAGAACCCGGATGATGATTCGGGATTGGGGTCAAAGACATCAGAATTTTCTTGGGGAGAAATGACAGATGCTTGGTTCAATGCAATTCCGGCAGGTTGGGGTCCAGGTAGCCCTGTTTGGGATGATTTGGATAGTAGCAATAACCTTCTTTTGCCTTCCAATCTTCCCCCTTTTGGCAATGTTCAGCAAGATTTTCATAATTCTGATCCTCAGATGCAGCAATTCAATTTGGATTCAGCTTCTTCAGCTCCTTCTTCATATCCTGTGATGCCCTTCTTTTGGCAGAATCAAGACTGA

Network for GWHGAAZE026874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	183	232	2.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.390
	SRR3591706	second leaf	4.625
	SRR3591707	mature leaf	6.789
	SRR3591708	Shoot apex	6.379
	SRR3591709	Stem	9.353
	SRR3591710	White floral bud	6.534
	SRR3591711	White flower	12.080
	SRR3591712	Green floral bud	2.722
	SRR3591713	Yellow flower	5.970
SRP173429	SRR8316895	Juvenile bud stage	2.064
	SRR8316896	Juvenile bud stage	1.943
	SRR8316897	Juvenile bud stage	1.127
	SRR8316894	Third green stage	1.560
	SRR8316900	Third green stage	1.184
	SRR8316901	Third green stage	2.353
	SRR8316898	Complete white stage	1.602
	SRR8316899	Complete white stage	2.288
	SRR8316903	Complete white stage	3.264
	SRR8316902	Silver flowering stage	5.565
	SRR8316904	Silver flowering stage	5.153
	SRR8316905	Silver flowering stage	3.958
	SRR8316906	Gold flowering stage	15.610
	SRR8316907	Gold flowering stage	13.155
	SRR8316908	Gold flowering stage	10.368
SRP132670	SRR6706286	Control	0.953
	SRR6706287	Light intensity 50%	0.901
	SRR6706288	Light intensity 20%	0.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.852
	CNS0095593	Slightly white alabastrum(diploid) 2	0.962
	CNS0095594	Slightly white alabastrum(diploid) 3	1.839
	CNS0095595	Whole white alabastrum(diploid) 2	1.136
	CNS0095596	Whole white alabastrum(diploid) 3	0.479
	CNS0095597	Whole white alabastrum(diploid) 4	1.344
	CNS0095598	Silvery flower (diploied) 1	7.908
	CNS0095599	Silvery flower (diploied) 2	8.280
	CNS0095600	Silvery flower (diploied) 3	8.383
	CNS0095601	Golden flower (diploid) 1	4.541
	CNS0095602	Golden flower (diploid) 2	10.263
	CNS0095603	Golden flower (diploid) 3	8.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.350
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.268
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.414
	CNS0095610	Silvery flower (diploied) 1	5.917
	CNS0095611	Silvery flower (diploied) 2	1.293
	CNS0095612	Silvery flower (diploied) 3	2.058
	CNS0095613	Golden flower (tetraploid) 1	1.243
	CNS0095614	Golden flower (tetraploid) 2	2.978
	CNS0095615	Golden flower (tetraploid) 3	5.036
CRA001975	CRR073297	Stem 1	2.475
	CRR073298	Stem 2	4.936
	CRR073299	Stem 3	3.075
	CRR073300	Leaf 1	6.611
	CRR073301	Leaf 2	7.308
	CRR073302	Leaf 3	3.592
	CRR073303	Juvenile bud 1	1.113
	CRR073304	Juvenile bud 2	0.106
	CRR073305	Juvenile bud 3	5.950
	CRR073306	Third green 1	0.128
	CRR073307	Third green 2	0.889
	CRR073308	Third green 3	0.629
	CRR073309	Second white 1	0.201
	CRR073310	Second white 2	0.622
	CRR073311	Second white 3	0.660
	CRR073312	Silver flowering 1	0.696
	CRR073313	Silver flowering 2	2.083
	CRR073314	Silver flowering 3	0.474
	CRR073315	Gold flowering 1	0.216
	CRR073316	Gold flowering 2	1.005
	CRR073317	Gold flowering 3	0.139
	CRR073318	Tawny withering 1	2.635
	CRR073319	Tawny withering 2	2.733
	CRR073320	Tawny withering 3	1.695