Gene detail

Detail information of GWHGAAZE026949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10763.1	1.1735E-149	unnamed protein product [Coffea canephora]
COG	NP_248764.1	8E-25	serine/threonine protein kinase PpkA
Swissprot	tr\|O22040\|ANP1_ARATH	4E-52	Mitogen-activated protein kinase kinase kinase ANP1
trEMBL	tr\|A0A068UT29\|A0A068UT29_COFCA	4E-150	Coffea canephora DH200=94 genomic scaffold, scaffold_47 {ECO:0000313\|EMBL:CDP10763.1}
TAIR10	AT5G55090.1	1E-87	mitogen-activated protein kinase kinase kinase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12641962	12643212	-
GWHAAZE00000008	mRNA	12641962	12643212	-
GWHAAZE00000008	exon	12641962	12643212	-
GWHAAZE00000008	CDS	12641962	12643212	-

Transcript Sequence
>GWHTAAZE026983 ATGAACTGGACCCGAGGCCACACCATTGGCCGCGGCTCCACCGCCGCTGTCTCCTTCGCCACGTCCGATTCCGGCGAGTTTTTTGCCGTCAAATCGGCCGAGCTAGCGCATTCCGAATTATTACAAAGAGAGCAACATTTTTTGTGCAATTTGAGTAGTCCCTATCTAATTAGCTACAAAGGGTGTGATATTACTAGAGAGAATAATAAGCACATGTACAATATTTTCATGGAGTATATGCCCGGTGGCACGCTTGCCGATGCAAGTCACCTGCTCGATGAGGCAATGATCGTCTGCTACACACGCCAAATTGTGCAAGGGCTAGAGTACCTTCATTCAAATGGAATAGTGCATTGTGACATTAAGGGTCGGAATATTTTGATAGGTGAAAGTGGAGTCAAAATTGCCGATTTGGGTTGTGCCAAGAAGGTTGCGCCACCGTGCAAGGCGGCGGCAATTGGCGGTACACCGATGTTTATGGCACCAGAGGTGGCGCGTGGGGAAGAACAGGGGTACCCTGCTGATATTTGGGCACTTGGGTGTACGGTGATTGAAATGACCACCGGTGGTGAGTTACCCTGGCCAAATCACGATGACCCAATTTCGATTATGTACAAAATTGGATATTCCGGGGAGTTGCCGGAGTTTCCGAATTTTCTCTCCAGCCAAGCAGAGGATTTTCTTGCAAATTGTTTGAGGAGAGACCCGAAAGAGCGATGGACTGCCAAACAGCTTATGAACCACCCGTTTCTTAACGAATTGGATTCTTATACAAAGCGAATTAAAGAGGATTTTGATTCAATTTCTCCCACAAGTATTCTTGATCAAGGAATTTGGAACTCTGTTCAAGAAACAGAGTCTCTGGTTCTTGATAGCACTCCATTGTCTTCCCCAGAACAGAGGATCCGACGGCTGGGATTGAACTCAGGTGAGCCCAATTGGAGAGCGGAGGAGAGTTGGGTAATGGTCAGAGCCAGTGAAGTTTCCGTCGCCGTTGCCGGCGAGGGTAGGTGTGCGTCAGTAACAGGTTGGGTAGGTGAGGTGGAAAGTAGAGTGAGTGGAGAGGTAGGGTTAATAAATTTGAAAGATAAGAATGTTAGTAGTAGTTGTAGTTGTTGTTACAGTAATAGTAATAATGCCTCGGTGGATAGCACATGTGAAGATTGTTGTACTGTTGTAATGAGTAATAGCCTCAATTTTGTGAGACCCAAAAGAGTTTTGTTAATTAATGATCAATTTAAGGTTTTATAA

Network for GWHGAAZE026949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	251	7.60E-54

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20716	MAPKKK17_18	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.450
	SRR3591706	second leaf	0.375
	SRR3591707	mature leaf	0.278
	SRR3591708	Shoot apex	1.494
	SRR3591709	Stem	2.643
	SRR3591710	White floral bud	1.336
	SRR3591711	White flower	5.748
	SRR3591712	Green floral bud	0.441
	SRR3591713	Yellow flower	7.270
SRP173429	SRR8316895	Juvenile bud stage	0.397
	SRR8316896	Juvenile bud stage	0.277
	SRR8316897	Juvenile bud stage	0.263
	SRR8316894	Third green stage	0.201
	SRR8316900	Third green stage	0.455
	SRR8316901	Third green stage	0.460
	SRR8316898	Complete white stage	0.202
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.490
	SRR8316902	Silver flowering stage	0.594
	SRR8316904	Silver flowering stage	1.210
	SRR8316905	Silver flowering stage	0.494
	SRR8316906	Gold flowering stage	0.484
	SRR8316907	Gold flowering stage	1.610
	SRR8316908	Gold flowering stage	3.644
SRP132670	SRR6706286	Control	0.393
	SRR6706287	Light intensity 50%	0.486
	SRR6706288	Light intensity 20%	0.277
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.859
	CNS0095593	Slightly white alabastrum(diploid) 2	0.092
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.066
	CNS0095596	Whole white alabastrum(diploid) 3	0.106
	CNS0095597	Whole white alabastrum(diploid) 4	0.180
	CNS0095598	Silvery flower (diploied) 1	0.070
	CNS0095599	Silvery flower (diploied) 2	0.697
	CNS0095600	Silvery flower (diploied) 3	1.047
	CNS0095601	Golden flower (diploid) 1	0.490
	CNS0095602	Golden flower (diploid) 2	0.416
	CNS0095603	Golden flower (diploid) 3	0.701
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.263
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.782
	CNS0095610	Silvery flower (diploied) 1	6.811
	CNS0095611	Silvery flower (diploied) 2	1.705
	CNS0095612	Silvery flower (diploied) 3	1.112
	CNS0095613	Golden flower (tetraploid) 1	2.165
	CNS0095614	Golden flower (tetraploid) 2	5.159
	CNS0095615	Golden flower (tetraploid) 3	1.411
CRA001975	CRR073297	Stem 1	0.685
	CRR073298	Stem 2	0.454
	CRR073299	Stem 3	0.435
	CRR073300	Leaf 1	0.549
	CRR073301	Leaf 2	0.781
	CRR073302	Leaf 3	0.128
	CRR073303	Juvenile bud 1	0.168
	CRR073304	Juvenile bud 2	0.510
	CRR073305	Juvenile bud 3	0.135
	CRR073306	Third green 1	28.761
	CRR073307	Third green 2	10.910
	CRR073308	Third green 3	9.751
	CRR073309	Second white 1	4.404
	CRR073310	Second white 2	8.788
	CRR073311	Second white 3	1.790
	CRR073312	Silver flowering 1	6.121
	CRR073313	Silver flowering 2	6.916
	CRR073314	Silver flowering 3	6.694
	CRR073315	Gold flowering 1	0.263
	CRR073316	Gold flowering 2	0.065
	CRR073317	Gold flowering 3	0.147
	CRR073318	Tawny withering 1	1.781
	CRR073319	Tawny withering 2	2.747
	CRR073320	Tawny withering 3	2.370