Gene detail

Detail information of GWHGAAZE026953

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADO51747.1	0	fatty acid hydroperoxide lyase [Camellia sinensis]
COG	YP_002501570.1	3E-20	heme peroxidase
Swissprot	tr\|Q9ZSY9\|C74B2_ARATH	0	Linolenate hydroperoxide lyase, chloroplastic {ECO:0000305\|PubMed:9701595} (Precursor)
trEMBL	tr\|G4VV60\|G4VV60_CAMSI	0	Fatty acid hydroperoxide lyase {ECO:0000313\|EMBL:ADO51747.1}
TAIR10	AT4G15440.1	4E-106	hydroperoxide lyase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12743260	12748104	-
GWHAAZE00000008	mRNA	12743260	12748104	-
GWHAAZE00000008	exon	12743260	12743891	-
GWHAAZE00000008	exon	12744656	12745052	-
GWHAAZE00000008	exon	12747709	12748104	-
GWHAAZE00000008	CDS	12747709	12748104	-
GWHAAZE00000008	CDS	12744656	12745052	-
GWHAAZE00000008	CDS	12743260	12743891	-

Transcript Sequence
>GWHTAAZE026987 ATGATGAGCACGCCAACAACGCCGGCAGTGAAATCGGTGTCACCATTGCCGGTCCGTACAGTTCCCGGCAGCTACGGGATTCCGATGCTGGGGGCATTGCGGGACCGATTAGACTACTTTTGGTTCCAAGGACCTGAGAAATTTTACAAGTCGAGAATGGAGAAGCACAATAGTACTGTGCTGCGTACGAATGTGCCGCCGTCGTTTCCTCTGTTCACCGGAGTTAACCCTAACGTAATTGCTCTGCTCGATTGCAAGTCCTACTCTTACCTATTCGAGACGGATCTCGTCGATAAGGCCGAGTCACTGCTCGGTGAGTACCGGCCCAATGTTAATTTCGCCGGCGGCGTACGTGTTTGCCCGTATCTCGATACTTCTGAACCTCAGCATGCTAAGGTGAAGAGCTTTATACTGGACATCTTGAAGCAAGGCTCTGCAAATTGGTCCCAATCCCTCACGTCCAAGCTCGATACCATGTGGGACACCCTTGAGTCTGAGGTTTCAACTTCTGGCTCAGCCCAGTACCGTGTGCCTTTACAGGAGTTCGTCTTCAGCTTTCTGGTTCGCTGCTTCATAGGAGTTGACCCCACACCTGAGATCGCCAAGTCCGGCCCCTCCACACTGACCATTTGGCTGGCTCTTCAGGTCCTCCCCACCATTTATATCGGCATTTTACAGCCACTCGAAGAGATCTTCCTCCACTCCTTCGCCTACCCTTTTGCTTTCATCAGCCGTGGCTACAACAAGCTCGTTCAGTTCATAGAGACAACTGGCAAAGAAGCAGTAGATCGAGGTGTGACAGAGTTCAAACTCACCAAGAAAGACGCTCTTCACAATCTCTTATTCGTGATGGGCTTTAACGCCTTTGGTGGACTATCACTTCTATTCCTGGCTCTACTGGGTCGACTTGGTTCTGATACAACTGGGTTACAACCAAGATTGAGGGCAGAAGCGAGGGAGAAAGGCGGGGCAAATCTAAGTTTCGACTCGGTGAAAGAAATGGAACTCATTCATGGATTCGTGTACGAGTCACTCCGGTTCCAGCCGACCGTTCCATCTCAGTACGGTCGAGCCAAAAAGGATTTTCTGCTGAGCTCACATGATGCAGTTTACGAGATAAAGAAAGGCGAACTTCTTGTAGGGTTCCTGCCGGTGGTTATGAGGGACCCAAAGGTGTATGATGACCCAGACACATTTAAATGTGAACGATTTATCAACGAGAAAGGGAAGGATTTACTGAACTATCTGTATTGGTCGAATGGTCCACAGACTGGTGAACCCACTGCATCGAACAAGATGTGTGCAGCTAAGGACATGGTGATTTTTATGGCGTGTTTCTTACTTGCTCATATGCTTCGCAGATATGACTCGATCACATTGGATTCAAGTTCAATCACCTCGGTGGAAAAGGCAGTTGTTGTGTAA

Network for GWHGAAZE026953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	310	422	1.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004497	molecular_function	monooxygenase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	123.157
	SRR3591706	second leaf	40.711
	SRR3591707	mature leaf	94.282
	SRR3591708	Shoot apex	107.773
	SRR3591709	Stem	43.564
	SRR3591710	White floral bud	10.172
	SRR3591711	White flower	8.473
	SRR3591712	Green floral bud	4.615
	SRR3591713	Yellow flower	6.505
SRP173429	SRR8316895	Juvenile bud stage	6.731
	SRR8316896	Juvenile bud stage	7.848
	SRR8316897	Juvenile bud stage	4.951
	SRR8316894	Third green stage	3.879
	SRR8316900	Third green stage	10.418
	SRR8316901	Third green stage	8.403
	SRR8316898	Complete white stage	6.489
	SRR8316899	Complete white stage	8.525
	SRR8316903	Complete white stage	7.599
	SRR8316902	Silver flowering stage	8.103
	SRR8316904	Silver flowering stage	10.161
	SRR8316905	Silver flowering stage	7.173
	SRR8316906	Gold flowering stage	21.328
	SRR8316907	Gold flowering stage	21.134
	SRR8316908	Gold flowering stage	25.598
SRP132670	SRR6706286	Control	20.299
	SRR6706287	Light intensity 50%	17.457
	SRR6706288	Light intensity 20%	15.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.846
	CNS0095593	Slightly white alabastrum(diploid) 2	8.613
	CNS0095594	Slightly white alabastrum(diploid) 3	11.043
	CNS0095595	Whole white alabastrum(diploid) 2	9.015
	CNS0095596	Whole white alabastrum(diploid) 3	12.393
	CNS0095597	Whole white alabastrum(diploid) 4	8.350
	CNS0095598	Silvery flower (diploied) 1	20.244
	CNS0095599	Silvery flower (diploied) 2	21.150
	CNS0095600	Silvery flower (diploied) 3	26.579
	CNS0095601	Golden flower (diploid) 1	23.392
	CNS0095602	Golden flower (diploid) 2	31.856
	CNS0095603	Golden flower (diploid) 3	31.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.702
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.074
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.362
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.686
	CNS0095610	Silvery flower (diploied) 1	49.825
	CNS0095611	Silvery flower (diploied) 2	65.816
	CNS0095612	Silvery flower (diploied) 3	65.023
	CNS0095613	Golden flower (tetraploid) 1	58.020
	CNS0095614	Golden flower (tetraploid) 2	58.653
	CNS0095615	Golden flower (tetraploid) 3	74.872
CRA001975	CRR073297	Stem 1	21.306
	CRR073298	Stem 2	17.749
	CRR073299	Stem 3	25.312
	CRR073300	Leaf 1	8.842
	CRR073301	Leaf 2	13.752
	CRR073302	Leaf 3	13.058
	CRR073303	Juvenile bud 1	8.145
	CRR073304	Juvenile bud 2	11.323
	CRR073305	Juvenile bud 3	10.485
	CRR073306	Third green 1	17.055
	CRR073307	Third green 2	18.492
	CRR073308	Third green 3	13.760
	CRR073309	Second white 1	18.892
	CRR073310	Second white 2	19.344
	CRR073311	Second white 3	15.766
	CRR073312	Silver flowering 1	20.131
	CRR073313	Silver flowering 2	14.142
	CRR073314	Silver flowering 3	18.860
	CRR073315	Gold flowering 1	1.958
	CRR073316	Gold flowering 2	1.843
	CRR073317	Gold flowering 3	1.518
	CRR073318	Tawny withering 1	5.325
	CRR073319	Tawny withering 2	4.889
	CRR073320	Tawny withering 3	1.267