Gene detail

Detail information of GWHGAAZE026974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEM62884.1	0	ACC oxidase 5 [Actinidia deliciosa]
COG	YP_003514298.1	2E-30	2OG-Fe(II) oxygenase
Swissprot	tr\|Q08507\|ACCO3_PETHY	0	1-aminocyclopropane-1-carboxylate oxidase 3
trEMBL	tr\|G3DSC3\|G3DSC3_ACTDE	0	ACC oxidase 5 {ECO:0000313\|EMBL:AEM62884.1}
TAIR10	AT1G05010.1	1E-130	ethylene-forming enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13022227	13023938	+
GWHAAZE00000008	mRNA	13022227	13023938	+
GWHAAZE00000008	exon	13022227	13022331	+
GWHAAZE00000008	exon	13022652	13022875	+
GWHAAZE00000008	exon	13023227	13023560	+
GWHAAZE00000008	exon	13023669	13023938	+
GWHAAZE00000008	CDS	13022227	13022331	+
GWHAAZE00000008	CDS	13022652	13022875	+
GWHAAZE00000008	CDS	13023227	13023560	+
GWHAAZE00000008	CDS	13023669	13023938	+

Transcript Sequence
>GWHTAAZE027008 ATGGAGAATTTCCCAATCATCAACATGGAGAAGCTAAAAGGTGAAGAGAGGGGAGCTACTATGGAGATTATTAAAGATGCTTGTGAGAATTGGGGTTTCTTTGAGCTGGTGAATCATGGGATTCCACATGAGCTAATGGACAGAGTGGAAAGATTGACAAAAGAGCACTACAAGAAGTGTTTGGAGGATAAGTTTAAGGAATTGGTGGCAAGCAAAGTTTTAGAGAGAGAAGTTAATACAGAGGATATGGACTGGGAAAGCACTTTCTTCTTGCGCCATCTCCCTGTTTCAAACATTTCACAGATTTCTGATCTCGATGATGAGTACAGGAAAGTAATGAAGGAATTTGCAGCAAAACTGGAGAAACTAGCAGAGGAGCTATTGGACTTGGTATGCGACAACGTCGGGCTTGAGAAAGGGTACCTAAAAAAGGCTTTTTATGGATCAAAAGGTCCTAATTTTGGGACAAAGGTGAGCAACTACCCACCATGCCCCAACCCTGACCTAGTAAAGGGCCTCCGAGCCCACACAGATGCCGGAGGTATCATCTTACTCTTCCAAGATGACAAGGTCAGCGGCCTCCAGCTCCTCAAGGACGGGAACTGGGTAGACGTACCACCCATTCGCCATTCCATTGTTATCAACCTCGGCGATCAACTTGAGGTGATTACAAATGGAAAGTACAAAAGCATGCTGCACCGAGTGATTGCCCAAACAGATGGGAATCGGATGTCGATTGCGTCATTCTATAATCCAGGCAGTGATGCTGTGATTTATCCGGCACCAGAATTAACGAGGGAGATGAAAGAAGGAGAACAAGTGGTGTACCCAAAATTCATATTTGATGACTACATGAAGCTATATGCTGGCCTCAAATTCCAAGCCAAGGAGCCAAGGTTTGAAGCCATGAAAGCCATGGAGCAAGACTCCTAA

Network for GWHGAAZE026974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	5	66	4.60E-13
PF03171.21	2OG-FeII_Oxy	158	252	9.60E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05933	E1.14.17.4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.784
	SRR3591706	second leaf	1.508
	SRR3591707	mature leaf	0.887
	SRR3591708	Shoot apex	1.346
	SRR3591709	Stem	6.159
	SRR3591710	White floral bud	5.471
	SRR3591711	White flower	36.123
	SRR3591712	Green floral bud	2.520
	SRR3591713	Yellow flower	14.738
SRP173429	SRR8316895	Juvenile bud stage	0.440
	SRR8316896	Juvenile bud stage	0.623
	SRR8316897	Juvenile bud stage	0.362
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.248
	SRR8316901	Third green stage	0.600
	SRR8316898	Complete white stage	1.102
	SRR8316899	Complete white stage	0.345
	SRR8316903	Complete white stage	1.577
	SRR8316902	Silver flowering stage	1.395
	SRR8316904	Silver flowering stage	1.255
	SRR8316905	Silver flowering stage	0.482
	SRR8316906	Gold flowering stage	6.374
	SRR8316907	Gold flowering stage	3.160
	SRR8316908	Gold flowering stage	12.398
SRP132670	SRR6706286	Control	0.093
	SRR6706287	Light intensity 50%	0.132
	SRR6706288	Light intensity 20%	0.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.402
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.139
	CNS0095595	Whole white alabastrum(diploid) 2	0.164
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.067
	CNS0095598	Silvery flower (diploied) 1	6.169
	CNS0095599	Silvery flower (diploied) 2	2.801
	CNS0095600	Silvery flower (diploied) 3	5.147
	CNS0095601	Golden flower (diploid) 1	2.972
	CNS0095602	Golden flower (diploid) 2	6.039
	CNS0095603	Golden flower (diploid) 3	7.343
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.180
	CNS0095610	Silvery flower (diploied) 1	11.767
	CNS0095611	Silvery flower (diploied) 2	14.458
	CNS0095612	Silvery flower (diploied) 3	5.353
	CNS0095613	Golden flower (tetraploid) 1	28.108
	CNS0095614	Golden flower (tetraploid) 2	43.721
	CNS0095615	Golden flower (tetraploid) 3	3.623
CRA001975	CRR073297	Stem 1	0.070
	CRR073298	Stem 2	0.083
	CRR073299	Stem 3	0.179
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.046
	CRR073304	Juvenile bud 2	0.094
	CRR073305	Juvenile bud 3	0.192
	CRR073306	Third green 1	0.220
	CRR073307	Third green 2	0.297
	CRR073308	Third green 3	0.082
	CRR073309	Second white 1	0.494
	CRR073310	Second white 2	0.740
	CRR073311	Second white 3	0.349
	CRR073312	Silver flowering 1	0.686
	CRR073313	Silver flowering 2	0.286
	CRR073314	Silver flowering 3	0.845
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.904
	CRR073317	Gold flowering 3	0.252
	CRR073318	Tawny withering 1	15.474
	CRR073319	Tawny withering 2	25.350
	CRR073320	Tawny withering 3	11.339