Gene detail

Detail information of GWHGAAZE027054

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP43662.1	5.0632E-103	hypothetical protein JCGZ_24120 [Jatropha curcas]
COG	YP_007096787.1	3E-23	glutathione S-transferase
Swissprot	tr\|Q03666\|GSTX4_TOBAC	9E-99	Probable glutathione S-transferase
trEMBL	tr\|A0A067L5G6\|A0A067L5G6_JATCU	2E-103	Uncharacterized protein {ECO:0000313\|EMBL:KDP43662.1}
TAIR10	AT1G17180.1	4E-75	glutathione S-transferase TAU 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14080378	14081780	-
GWHAAZE00000008	mRNA	14080378	14081780	-
GWHAAZE00000008	exon	14081460	14081780	-
GWHAAZE00000008	exon	14080378	14080725	-
GWHAAZE00000008	CDS	14081460	14081780	-
GWHAAZE00000008	CDS	14080378	14080725	-

Transcript Sequence
>GWHTAAZE027088 ATGGATGATGAAGTAGTTCTTCTAGATTTCTGGCCTAGCATGTTTTGTGTGAGGATCAAAATTGCACTTGCAGAAAAAGGCGTAAAGTATGAGTGTAAAGAACAAGACTTGCTCGGGAATATGAAGAGCCAGATGCTGGTCGAGTTGAATCTGGTTCTGAAAAAAGTCCCTATTCTCATCCACAATGGCAAGGCGGTCTGTGAATCCCTCATTATTGTAGAGTATATTGATGAGGTTTGGAGTGATAAAGCTCCATTGTTGCCCTCTGATCCTTACCAGAGATCTCAGGCCAAGTTTTGGGCCAATTTTATTGACAAGAAGATATGGAGTAGTGGGCGTAAATTATGGAGAACAAATGGAGAAAAGCTGGAAGAAGCCAAGATTGAATTCATTGAGAGCTTAAAGCTACTGGAAGGAAACCTTGGGGACAACAAGCCTTACTTTGGTGGTGAGACTTTCGGGTTTCTTGACATAGCCTTTGTTCCCTTCTATTGCTGGTTTTATGTGTACGAGACCTTTGGCAACTTCACCATAGAGCCACATTGCCCCAAGTTGATTGAATGGGCTACAAGATGCCTACAAAAGGAGAGTGTGTCCAAGTCCTTGCCTGAGCAACTCAAGATCTATGACTTTGTTTTACAGGTTAGGAAAATATATCGGAAAGATTAG

Network for GWHGAAZE027054

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	6	78	2.10E-15
PF13410.7	GST_C_2	123	189	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.521
	SRR3591706	second leaf	5.387
	SRR3591707	mature leaf	2.159
	SRR3591708	Shoot apex	8.165
	SRR3591709	Stem	4.649
	SRR3591710	White floral bud	1.419
	SRR3591711	White flower	2.123
	SRR3591712	Green floral bud	4.198
	SRR3591713	Yellow flower	1.517
SRP173429	SRR8316895	Juvenile bud stage	2.899
	SRR8316896	Juvenile bud stage	5.058
	SRR8316897	Juvenile bud stage	3.270
	SRR8316894	Third green stage	2.491
	SRR8316900	Third green stage	6.132
	SRR8316901	Third green stage	6.775
	SRR8316898	Complete white stage	0.750
	SRR8316899	Complete white stage	6.528
	SRR8316903	Complete white stage	1.437
	SRR8316902	Silver flowering stage	0.421
	SRR8316904	Silver flowering stage	0.263
	SRR8316905	Silver flowering stage	0.302
	SRR8316906	Gold flowering stage	0.912
	SRR8316907	Gold flowering stage	0.630
	SRR8316908	Gold flowering stage	0.872
SRP132670	SRR6706286	Control	1.056
	SRR6706287	Light intensity 50%	1.434
	SRR6706288	Light intensity 20%	2.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.925
	CNS0095593	Slightly white alabastrum(diploid) 2	5.239
	CNS0095594	Slightly white alabastrum(diploid) 3	4.723
	CNS0095595	Whole white alabastrum(diploid) 2	6.419
	CNS0095596	Whole white alabastrum(diploid) 3	6.682
	CNS0095597	Whole white alabastrum(diploid) 4	3.576
	CNS0095598	Silvery flower (diploied) 1	6.098
	CNS0095599	Silvery flower (diploied) 2	2.165
	CNS0095600	Silvery flower (diploied) 3	1.422
	CNS0095601	Golden flower (diploid) 1	4.636
	CNS0095602	Golden flower (diploid) 2	2.413
	CNS0095603	Golden flower (diploid) 3	3.010
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.707
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.782
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.930
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.112
	CNS0095610	Silvery flower (diploied) 1	1.011
	CNS0095611	Silvery flower (diploied) 2	2.844
	CNS0095612	Silvery flower (diploied) 3	0.886
	CNS0095613	Golden flower (tetraploid) 1	0.658
	CNS0095614	Golden flower (tetraploid) 2	1.217
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.336
	CRR073298	Stem 2	3.748
	CRR073299	Stem 3	1.157
	CRR073300	Leaf 1	3.914
	CRR073301	Leaf 2	3.364
	CRR073302	Leaf 3	1.863
	CRR073303	Juvenile bud 1	0.147
	CRR073304	Juvenile bud 2	1.035
	CRR073305	Juvenile bud 3	0.177
	CRR073306	Third green 1	0.280
	CRR073307	Third green 2	0.225
	CRR073308	Third green 3	0.801
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.062
	CRR073311	Second white 3	0.095
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.018
	CRR073315	Gold flowering 1	0.632
	CRR073316	Gold flowering 2	2.294
	CRR073317	Gold flowering 3	0.812
	CRR073318	Tawny withering 1	3.162
	CRR073319	Tawny withering 2	3.200
	CRR073320	Tawny withering 3	1.559