Gene detail

Detail information of GWHGAAZE027061

Functional Annotation

Database	Orthologs	Annotation
Nr	ACM43505.1	polyphenoloxidase [Camellia nitidissima]
Swissprot	tr\|P43309\|PPO_MALDO	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|B9VS06\|B9VS06_9ERIC	Polyphenoloxidase {ECO:0000313\|EMBL:ACM43505.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14189131	14190855	+
GWHAAZE00000008	mRNA	14189131	14190855	+
GWHAAZE00000008	exon	14189131	14190855	+
GWHAAZE00000008	CDS	14189131	14190855	+

Transcript Sequence
>GWHTAAZE027095 ATGGCTTTTCTTCCGCTTCCCACAACTGCCTACTCTTCCTTCTTCCCTTCTTGTCCCCGCTTCTTTAAGGCATCAAATTTGCCCTTCAAATTCTCGTGCAATGCCATGGAAAATGATGATCATCAACAAAACACTTCTCTACCAAAACTTGACCGGAGAAACATCCTCCTTGGCTTAGGTGGTCTCTACGGCACCGCCAATCTCTCCGCAGACCAGCTAACCTACGCCACACCCGTCCCACCACCGGACATCTCAAAATGCGGTCCGGCCGAACTGTCAGACGGCACAATCATATCAACCGATTGTTGCCCTCCACTAACCTCGAAAATCATTGATTTCAAGCTCCCCCCACCACCTAAAGCCCTTCGGGTTAGACCCGCGGCACATTTGGCTAATGATAAGTATGTAGCCAAGTTTTCGAAAGCCATCGAGCTTATGAAAGCCCTTCCCAAAGACGATCCACGCAACTTTACGCAACAAGCTAACATCCACTGTGCTTATTGCAATGGCGCATACGATCAAGTTGGATTCCCTAACCTCGAGCTTCAAGTCCACAATTCTTGGCTCTTTTTTCCCTTTCACAGATGGTACTTGTACTTTTACGAAAAAATTTTGGGCAAATTAATCAATGACCCGACTTTTGCTTTGCCCTTCTGGAACTGGGACAATCCTCGCGGTATGCAAATGCCCGCCATGTTTGTGGACCCCAGCTCTTCGCTCTACGATGAGTTTCGCAACAAGAGCCACCTGCCACCAGAAATTATTGACCTTGGCTATGCTGGAAGTGATTCGATGACTTCAAGTCCTATAGAAAGAATATCGTTCAATTTGTCAATAATGTACCGGGAAATGGTCCCTAATGCATGTAATCAACTGCTTTTCTTCGGGAAACCTTACCGTGGGGGTAGCAACCCCAACCCCGGAGGTGGATCCATTGAGAAAGTACCTCATGTTCCGGTGCACCGGTGGGGCGGTGACCCGACTCAGCCCCATGGAGAGGACTTGGGCAACTTCTACTCCGCAGGCAGAGACACTCTGTTCTATTCTCACCACGCGAATGTGGACCGAATGTGGACCATATGGAAAACTCTAGGTGATAAGAGAAAGGACATCACGGACCCTGATTGGCTCAACACAGCTTTCCTTTTTTACGACGAAAATGCGCAACTTGTACGTGTGAAAATTAAAGACTGTTTGGACCCCAAAAAACTCGGATATGTCTACCAACCAGTAGACATTCCATGGCGTAACGGTAGGCCAGTGCCACGCGCCACAAAGTCAAACGCAGTTGTAAATTTTGCAAGTGCGGTTGACTTCAAGAAAATAGTGTTCCCAGTAACATTGAACAAAATCATCAAAGTCTTAGTTCCCAGGCCGAAGAAGTCCAGGAACAAGAAACAGAAGGAAACAGAGGACGAGATACTGACTATAAACGGGATAAAGTGTGATAGCGAGAAGTACGTGAAGTTTGATGTGATTATAAATGATGAGGATGAGATAGGGAATACGCCGGATAAGTGTGAGTTTGCCGGTAGCTTTGCGCAGTTGCCGCACAAGATAAAGAGCGGGGAGACAATAAAGACATCTTTGAGTTTATGCATAGGGGAGCTGTTGGAGGACTTGGAAGCTGAAGATGATGAGAGCGTGTTGGTGATTTTGGTGCCGCGAGCTGGGACTGATGATTTAACCATTGATTCCATCAATATTGAGTACCAATCTGCATGA

Network for GWHGAAZE027061

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	154	363	1.40E-29
PF12142.9	PPO1_DWL	370	420	3.40E-26
PF12143.9	PPO1_KFDV	444	571	4.00E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0046148	biological_process	pigment biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004097	molecular_function	catechol oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.090
	SRR3591706	second leaf	355.092
	SRR3591707	mature leaf	140.281
	SRR3591708	Shoot apex	47.808
	SRR3591709	Stem	68.865
	SRR3591710	White floral bud	3.975
	SRR3591711	White flower	24.809
	SRR3591712	Green floral bud	2.155
	SRR3591713	Yellow flower	25.093
SRP173429	SRR8316895	Juvenile bud stage	1.875
	SRR8316896	Juvenile bud stage	12.606
	SRR8316897	Juvenile bud stage	0.952
	SRR8316894	Third green stage	1.016
	SRR8316900	Third green stage	0.329
	SRR8316901	Third green stage	0.961
	SRR8316898	Complete white stage	1.063
	SRR8316899	Complete white stage	7.298
	SRR8316903	Complete white stage	0.724
	SRR8316902	Silver flowering stage	0.372
	SRR8316904	Silver flowering stage	0.678
	SRR8316905	Silver flowering stage	0.224
	SRR8316906	Gold flowering stage	1.770
	SRR8316907	Gold flowering stage	2.626
	SRR8316908	Gold flowering stage	4.412
SRP132670	SRR6706286	Control	6.700
	SRR6706287	Light intensity 50%	5.592
	SRR6706288	Light intensity 20%	4.063
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.489
	CNS0095593	Slightly white alabastrum(diploid) 2	1.652
	CNS0095594	Slightly white alabastrum(diploid) 3	0.163
	CNS0095595	Whole white alabastrum(diploid) 2	0.837
	CNS0095596	Whole white alabastrum(diploid) 3	0.312
	CNS0095597	Whole white alabastrum(diploid) 4	1.369
	CNS0095598	Silvery flower (diploied) 1	4.178
	CNS0095599	Silvery flower (diploied) 2	4.375
	CNS0095600	Silvery flower (diploied) 3	1.470
	CNS0095601	Golden flower (diploid) 1	2.677
	CNS0095602	Golden flower (diploid) 2	4.951
	CNS0095603	Golden flower (diploid) 3	4.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.460
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.099
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.532
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.851
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.877
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.871
	CNS0095610	Silvery flower (diploied) 1	4.582
	CNS0095611	Silvery flower (diploied) 2	11.907
	CNS0095612	Silvery flower (diploied) 3	3.471
	CNS0095613	Golden flower (tetraploid) 1	53.666
	CNS0095614	Golden flower (tetraploid) 2	18.134
	CNS0095615	Golden flower (tetraploid) 3	1.776
CRA001975	CRR073297	Stem 1	15.449
	CRR073298	Stem 2	16.109
	CRR073299	Stem 3	10.992
	CRR073300	Leaf 1	2.066
	CRR073301	Leaf 2	7.005
	CRR073302	Leaf 3	2.290
	CRR073303	Juvenile bud 1	0.881
	CRR073304	Juvenile bud 2	0.109
	CRR073305	Juvenile bud 3	4.343
	CRR073306	Third green 1	0.036
	CRR073307	Third green 2	0.035
	CRR073308	Third green 3	0.121
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.052
	CRR073311	Second white 3	0.050
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.048
	CRR073314	Silver flowering 3	0.279
	CRR073315	Gold flowering 1	20.342
	CRR073316	Gold flowering 2	42.972
	CRR073317	Gold flowering 3	24.417
	CRR073318	Tawny withering 1	7.824
	CRR073319	Tawny withering 2	9.370
	CRR073320	Tawny withering 3	4.162