Gene detail

Detail information of GWHGAAZE027074

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082879.1	2.791E-147	PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial [Sesamum indicum]
COG	YP_633997.1	9E-71	metallo-beta-lactamase
Swissprot	tr\|Q9C8L4\|ETHE1_ARATH	8E-134	Persulfide dioxygenase ETHE1 homolog, mitochondrial (Precursor)
trEMBL	tr\|A0A022RZD6\|A0A022RZD6_ERYGU	3E-146	Uncharacterized protein {ECO:0000313\|EMBL:EYU45038.1}
TAIR10	AT1G53580.1	7E-107	glyoxalase II 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14403547	14407249	+
GWHAAZE00000008	mRNA	14403547	14407249	+
GWHAAZE00000008	exon	14403547	14403678	+
GWHAAZE00000008	exon	14404971	14405099	+
GWHAAZE00000008	exon	14405194	14405301	+
GWHAAZE00000008	exon	14405655	14405789	+
GWHAAZE00000008	exon	14405878	14405908	+
GWHAAZE00000008	exon	14406390	14406445	+
GWHAAZE00000008	exon	14406575	14406634	+
GWHAAZE00000008	exon	14406776	14406829	+
GWHAAZE00000008	exon	14406973	14406997	+
GWHAAZE00000008	exon	14407161	14407249	+
GWHAAZE00000008	CDS	14403547	14403678	+
GWHAAZE00000008	CDS	14404971	14405099	+
GWHAAZE00000008	CDS	14405194	14405301	+
GWHAAZE00000008	CDS	14405655	14405789	+
GWHAAZE00000008	CDS	14405878	14405908	+
GWHAAZE00000008	CDS	14406390	14406445	+
GWHAAZE00000008	CDS	14406575	14406634	+
GWHAAZE00000008	CDS	14406776	14406829	+
GWHAAZE00000008	CDS	14406973	14406997	+
GWHAAZE00000008	CDS	14407161	14407249	+

Transcript Sequence
>GWHTAAZE027108 ATGGAGTCATCTTACACGACGTCGTCTTTGTCTCAGCCTTCTAGGCTATTGTTCCGTCAACTCTTCGAAAAAGAGTCCTCCACATATACTTACCTTCTTGCCGATACTTCTCACCCCGAAAAACCCGCCTTGCTGGTTGACCCAGTAGACAAGACAATTGATAGGGATCTTTCTCTTATTAAAGATCTGGGTTTGAAGCTTATATATGCTATAAACACCCATGTACATGCCGATCATGTTACTGGGAGTGGCCTGATGAAGAATAAGGTTCCTGGTCTGAAATCAATTATTTCCAAAGCAAGCAATGCAAAAGCTGATCTTTTGGTTGAAGCTGGCGATAAAATCCGTTTTGGTGATCTTTTTTTGGAGGTTCGTGCCACTCCAGGGCATACACTAGGTTGTGTCACCTATATTACAGGAGACAGACCTAATCATCCCCAACCGAGGATGGCTTTCACAGGTGACGCTTTGTTGATACGCGGCTGTGGGAGGACAGATTTTCAGGGTACTGTAAAACATATTTGGTGGAAGGATTGGTGGAAGTTCAGAACAGCTATACAAGTCAGTTCATTCACAGGCAAGGACATGAAAATCTTTACATTGCCAAAGGAGACATTGGTCTATCCTGCTCATGACTACAAAGGATTTACTGTTAGTACCGTGGGGGAAGAGATTCTTTATAATCCTCGTCTGACAAAAGATGAGGAAACATTCAAGAACATCATGGCAAACTTGAACCTTTCGTACCCCAAGATGATAGACATAGCGGTACCTGCAAATATGGTTTGCGGGTTGCAAGATCCGGATTCCAAAGCCTGA

Network for GWHGAAZE027074

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00753.28	Lactamase_B	27	179	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17725	ETHE1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.807
	SRR3591706	second leaf	1.836
	SRR3591707	mature leaf	6.470
	SRR3591708	Shoot apex	8.286
	SRR3591709	Stem	17.252
	SRR3591710	White floral bud	20.359
	SRR3591711	White flower	22.229
	SRR3591712	Green floral bud	9.904
	SRR3591713	Yellow flower	12.264
SRP173429	SRR8316895	Juvenile bud stage	9.597
	SRR8316896	Juvenile bud stage	11.332
	SRR8316897	Juvenile bud stage	7.642
	SRR8316894	Third green stage	5.696
	SRR8316900	Third green stage	19.858
	SRR8316901	Third green stage	15.028
	SRR8316898	Complete white stage	15.657
	SRR8316899	Complete white stage	18.962
	SRR8316903	Complete white stage	22.704
	SRR8316902	Silver flowering stage	38.947
	SRR8316904	Silver flowering stage	55.529
	SRR8316905	Silver flowering stage	28.956
	SRR8316906	Gold flowering stage	90.675
	SRR8316907	Gold flowering stage	96.273
	SRR8316908	Gold flowering stage	97.568
SRP132670	SRR6706286	Control	24.055
	SRR6706287	Light intensity 50%	23.729
	SRR6706288	Light intensity 20%	24.320
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.255
	CNS0095593	Slightly white alabastrum(diploid) 2	13.112
	CNS0095594	Slightly white alabastrum(diploid) 3	12.248
	CNS0095595	Whole white alabastrum(diploid) 2	10.876
	CNS0095596	Whole white alabastrum(diploid) 3	13.713
	CNS0095597	Whole white alabastrum(diploid) 4	12.649
	CNS0095598	Silvery flower (diploied) 1	18.974
	CNS0095599	Silvery flower (diploied) 2	29.000
	CNS0095600	Silvery flower (diploied) 3	44.700
	CNS0095601	Golden flower (diploid) 1	19.705
	CNS0095602	Golden flower (diploid) 2	30.688
	CNS0095603	Golden flower (diploid) 3	30.157
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.904
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.335
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.009
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.810
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.843
	CNS0095610	Silvery flower (diploied) 1	70.991
	CNS0095611	Silvery flower (diploied) 2	80.289
	CNS0095612	Silvery flower (diploied) 3	92.336
	CNS0095613	Golden flower (tetraploid) 1	54.327
	CNS0095614	Golden flower (tetraploid) 2	57.202
	CNS0095615	Golden flower (tetraploid) 3	55.540
CRA001975	CRR073297	Stem 1	11.519
	CRR073298	Stem 2	12.813
	CRR073299	Stem 3	12.266
	CRR073300	Leaf 1	16.580
	CRR073301	Leaf 2	13.906
	CRR073302	Leaf 3	16.979
	CRR073303	Juvenile bud 1	21.166
	CRR073304	Juvenile bud 2	21.991
	CRR073305	Juvenile bud 3	20.164
	CRR073306	Third green 1	57.500
	CRR073307	Third green 2	47.119
	CRR073308	Third green 3	46.860
	CRR073309	Second white 1	61.623
	CRR073310	Second white 2	65.075
	CRR073311	Second white 3	56.015
	CRR073312	Silver flowering 1	41.468
	CRR073313	Silver flowering 2	35.776
	CRR073314	Silver flowering 3	30.420
	CRR073315	Gold flowering 1	19.540
	CRR073316	Gold flowering 2	25.389
	CRR073317	Gold flowering 3	11.201
	CRR073318	Tawny withering 1	14.121
	CRR073319	Tawny withering 2	8.979
	CRR073320	Tawny withering 3	14.957