Gene detail

Detail information of GWHGAAZE027242

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009358128.1	PREDICTED: tryptophan synthase beta chain 1 [Pyrus x bretschneideri]
COG	YP_007108541.1	tryptophan synthase subunit beta
Swissprot	tr\|O50046\|TRPB_CAMAC	Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBL	tr\|M5WTG6\|M5WTG6_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ12603.1}
TAIR10	AT4G27070.1	tryptophan synthase beta-subunit 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16723895	16727874	-
GWHAAZE00000008	mRNA	16723895	16727874	-
GWHAAZE00000008	exon	16727577	16727874	-
GWHAAZE00000008	exon	16726561	16726917	-
GWHAAZE00000008	exon	16724392	16724834	-
GWHAAZE00000008	exon	16724198	16724292	-
GWHAAZE00000008	exon	16723895	16724070	-
GWHAAZE00000008	five_prime_UTR	16727805	16727874	-
GWHAAZE00000008	CDS	16727577	16727804	-
GWHAAZE00000008	CDS	16726561	16726917	-
GWHAAZE00000008	CDS	16724392	16724834	-
GWHAAZE00000008	CDS	16724198	16724292	-
GWHAAZE00000008	CDS	16723895	16724070	-

Transcript Sequence
>GWHTAAZE027276 AATTATTCCAAAACCCTACTCCCTCTCCTCATTAACCTCTTCTTCTTCCCATTTCAAATTCCAAAGATATATGTCTTGCCCTTCCTTCACCACCAAAACCCCTTCTATATCCTGTGTTCTCACCGGTAATTCGGCTCAGTCAACAATGGGCCAAGAAGCTGAACCGCTTCTCCTCCGCCCCGACTCCTTCGGCCGCTTCGGCAAGTTCGGTGGCAAGTACGTTCCCGAAACCCTTATGCATGCTCTCACTCAGCTCGAAGCCGCTTTTCATTTACTCGCCGGGGACCATGAATTTCAGCAAGAGCTAGACGGGATATTGAAAGACTATGTTGGTCGGGAAACCCCTCTGTATTTTGCAGAACGACTTACTGAGCACTATAAACGTCCCAATGGTGAAGGGCCACACATATACCTTAAGAGGGAAGATCTTAACCATACCGGTGCTCACAAGATCAACAATGCTGTTGCCCAAGCTTTGCTTGCCAAGAAATTGGGAAAAAAGCGAATCATTGCTGAAACTGGGGCTGGTCAGCATGGGGTTGCTACTGCTACTGTCTGCGCACGTTTTGGTTTGCAATGTATTATCTACATGGGTGCTCAAGACATGGAAAGGCAATCTCTTAATGTTTTTAGAATGCGGCTTCTTGGAGCTGAGGTTAGACCAGTTCATTCTGGCACAGCCACACTGAAGGATGCAACATCGGAAGCCATACGTGACTGGGTGACCAATGTGGAATCAACCCATTACATTTTGGGATCTGTTGCTGGGCCCCACCCATACCCAATGATGGTGAGAGAGTTCCATGCAGTAATTGGAAAAGAAACAAGGAAGCAGGCATTGGAGAAATGGGGTGGTAAGCCGGACGTGTTGGTTGCTTGTGTTGGTGGAGGTTCAAATGCAATGGGACTCTTTCATGAGTTTGTCGAGGACAAAGATGTCAGGCTGATTGGTGTAGAAGCTGCAGGTTTTGGGCTCAATAGTGGAAAGCACGCTGCCACTTTGACAAAAGGGGAGGTTGGTGTGCTTCATGGAGCTATGAGCTATTTATTGCAGGATGATGATGGTCAGATTGTTGAGCCTCATTCTATTAGTGCAGGGCTGGATTATCCTGGAGTAGGACCAGAGCACAGCTTCTTGAAAGATTTAGGACGTGCTGAATATTATAGCATCACAGATGAAGAAGCGCTTGAAGCTTTTAAGAGATTATCGAGACTCGAGGGGATAATACCAGCACTGGAGACATCTCATGCACTGGCCTACTTGGAGAAACTGTGCCCTACCCTCCCCAATGGAACCAAGTTGGTTCTTAACTGCAGTGGCAGAGGAGATAAAGATGTTCAAACTGCCATTAAGCATTTACAAGTTTGA

Network for GWHGAAZE027242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	87	417	2.10E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01696	trpB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Glycine, serine and threonine metabolism	map00260
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0000162	biological_process	tryptophan biosynthetic process
GO:0006568	biological_process	tryptophan metabolic process
GO:0004834	molecular_function	tryptophan synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.132
	SRR3591706	second leaf	63.742
	SRR3591707	mature leaf	34.819
	SRR3591708	Shoot apex	62.995
	SRR3591709	Stem	30.888
	SRR3591710	White floral bud	24.016
	SRR3591711	White flower	61.560
	SRR3591712	Green floral bud	30.652
	SRR3591713	Yellow flower	57.968
SRP173429	SRR8316895	Juvenile bud stage	35.374
	SRR8316896	Juvenile bud stage	51.634
	SRR8316897	Juvenile bud stage	28.403
	SRR8316894	Third green stage	17.760
	SRR8316900	Third green stage	40.332
	SRR8316901	Third green stage	41.715
	SRR8316898	Complete white stage	6.506
	SRR8316899	Complete white stage	26.645
	SRR8316903	Complete white stage	12.871
	SRR8316902	Silver flowering stage	16.033
	SRR8316904	Silver flowering stage	19.762
	SRR8316905	Silver flowering stage	10.028
	SRR8316906	Gold flowering stage	38.734
	SRR8316907	Gold flowering stage	51.719
	SRR8316908	Gold flowering stage	64.611
SRP132670	SRR6706286	Control	46.398
	SRR6706287	Light intensity 50%	46.148
	SRR6706288	Light intensity 20%	45.432
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.349
	CNS0095593	Slightly white alabastrum(diploid) 2	36.079
	CNS0095594	Slightly white alabastrum(diploid) 3	40.766
	CNS0095595	Whole white alabastrum(diploid) 2	33.735
	CNS0095596	Whole white alabastrum(diploid) 3	30.053
	CNS0095597	Whole white alabastrum(diploid) 4	24.116
	CNS0095598	Silvery flower (diploied) 1	35.582
	CNS0095599	Silvery flower (diploied) 2	36.663
	CNS0095600	Silvery flower (diploied) 3	40.930
	CNS0095601	Golden flower (diploid) 1	30.229
	CNS0095602	Golden flower (diploid) 2	42.340
	CNS0095603	Golden flower (diploid) 3	40.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.469
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.751
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.850
	CNS0095610	Silvery flower (diploied) 1	52.241
	CNS0095611	Silvery flower (diploied) 2	45.025
	CNS0095612	Silvery flower (diploied) 3	50.729
	CNS0095613	Golden flower (tetraploid) 1	31.785
	CNS0095614	Golden flower (tetraploid) 2	45.879
	CNS0095615	Golden flower (tetraploid) 3	25.287
CRA001975	CRR073297	Stem 1	60.199
	CRR073298	Stem 2	60.542
	CRR073299	Stem 3	64.231
	CRR073300	Leaf 1	43.425
	CRR073301	Leaf 2	50.149
	CRR073302	Leaf 3	47.367
	CRR073303	Juvenile bud 1	39.547
	CRR073304	Juvenile bud 2	31.811
	CRR073305	Juvenile bud 3	44.949
	CRR073306	Third green 1	27.128
	CRR073307	Third green 2	20.735
	CRR073308	Third green 3	25.976
	CRR073309	Second white 1	89.246
	CRR073310	Second white 2	52.809
	CRR073311	Second white 3	61.758
	CRR073312	Silver flowering 1	106.817
	CRR073313	Silver flowering 2	131.075
	CRR073314	Silver flowering 3	98.887
	CRR073315	Gold flowering 1	79.897
	CRR073316	Gold flowering 2	102.724
	CRR073317	Gold flowering 3	87.877
	CRR073318	Tawny withering 1	34.919
	CRR073319	Tawny withering 2	29.934
	CRR073320	Tawny withering 3	25.503