Gene detail

Detail information of GWHGAAZE027492

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12153.1	0	unnamed protein product [Coffea canephora]
COG	YP_003120813.1	9E-77	AMP-dependent synthetase and ligase
Swissprot	tr\|Q9T0A0\|LACS4_ARATH	0	Long chain acyl-CoA synthetase 4
trEMBL	tr\|A0A068UX04\|A0A068UX04_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12153.1}
TAIR10	AT4G23850.1	0	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20826208	20835930	+
GWHAAZE00000008	mRNA	20826208	20835930	+
GWHAAZE00000008	exon	20826208	20826365	+
GWHAAZE00000008	exon	20826835	20826898	+
GWHAAZE00000008	exon	20826982	20827071	+
GWHAAZE00000008	exon	20827526	20827582	+
GWHAAZE00000008	exon	20828350	20828398	+
GWHAAZE00000008	exon	20829430	20829506	+
GWHAAZE00000008	exon	20829855	20829894	+
GWHAAZE00000008	exon	20829977	20830071	+
GWHAAZE00000008	exon	20830273	20830440	+
GWHAAZE00000008	exon	20831019	20831129	+
GWHAAZE00000008	exon	20831206	20831293	+
GWHAAZE00000008	exon	20832233	20832299	+
GWHAAZE00000008	exon	20832988	20833063	+
GWHAAZE00000008	exon	20833160	20833277	+
GWHAAZE00000008	exon	20834414	20834659	+
GWHAAZE00000008	exon	20834754	20834893	+
GWHAAZE00000008	exon	20835458	20835640	+
GWHAAZE00000008	exon	20835739	20835930	+
GWHAAZE00000008	CDS	20826208	20826365	+
GWHAAZE00000008	CDS	20826835	20826898	+
GWHAAZE00000008	CDS	20826982	20827071	+
GWHAAZE00000008	CDS	20827526	20827582	+
GWHAAZE00000008	CDS	20828350	20828398	+
GWHAAZE00000008	CDS	20829430	20829506	+
GWHAAZE00000008	CDS	20829855	20829894	+
GWHAAZE00000008	CDS	20829977	20830071	+
GWHAAZE00000008	CDS	20830273	20830440	+
GWHAAZE00000008	CDS	20831019	20831129	+
GWHAAZE00000008	CDS	20831206	20831293	+
GWHAAZE00000008	CDS	20832233	20832299	+
GWHAAZE00000008	CDS	20832988	20833063	+
GWHAAZE00000008	CDS	20833160	20833277	+
GWHAAZE00000008	CDS	20834414	20834659	+
GWHAAZE00000008	CDS	20834754	20834893	+
GWHAAZE00000008	CDS	20835458	20835640	+
GWHAAZE00000008	CDS	20835739	20835930	+

Transcript Sequence
>GWHTAAZE027526 ATGCATATGGAACAGAAGAGGTATATAATTGAGATCGAGCCGGCAAAGGAAGCCGTTGATGGTAAGCCTTCGATCGGACCTGTCTATCGAAGCATTTTCGCTAAGGATGGGTTTCCACCTCCGATTGATGGCCTTGATAGCTGTTGGGACATATTTCGCATGTCTGTAGAGAAATATCCTGACAATCCAATGCTTGGTCTCCGTAAGATTGTGGATGGGAAGCCTGGTAAGTATGAATGGCAGACCTACAAAGAAGTATATGACATTGTGATGAAAGTTGGAAATTCCATTCGCAGTTGTGGGGTTCAGGAAGGAGGACGATGTGGTATTTATGGTGCCAATTGCCCAGAGTGGATTATGAGCATGGAGGCGTGCAATGCTCATGGGCTCTATTGTGTTCCTTTATATGACACTTTAGGTGCTGGTGCCATAGAATTTATCATATGCCACTCAGAGATTACGATTGCATTTGTAGAAGAAAAAAAGATTGCCGAGGTGTTCAAAACTTTTCCTAAAACCACAGAAAACTTAAGAACAATTGTGAGCTTTGGGAAAGTTACACCGGAACAAAAAGAAGAAGCTGAAAAGTTTGGCTTGGCAATACATTCCTGGGATGATTTTGTGTTATTGGGAGATGACAAACACTTTGACCTTCCAGTGAAAAAGAAAAGCGACATTTGTACGATAATGTACACGAGTGGAACAACTGGTGACCCGAAGGGTGTTTTGATTTCCAATAATAGCATTATTACTCTTGTAGCTGGAGTGAAGCGTTTGCTAGAGAGTGTGAATGAAGCGTTGCACGTGAAGGATGTATATATTTCTTACCTTCCTCTGGCACATATTTTTGATCGGGTGATTGAAGAATGTTTTATTAATCATGGGGCCTCGATAGGATTTTGGCGTGGGGATGTCAAATTGTTGATTGAAGATGTTGGAGAGTTAAAACCTACTGTTTTTTGCGCTGTACCCCGAGTGTTGGATAGAATTTATTCAGGTTTGCAACAGAAAATTTCTTCTGGGAGTTTCCTGAAACAATCAGTGTTTAGATATGCACAAGCATACAAATTACATAGCATGGCGAAGGGGCGCAAACATTCTGAGGCAGCTCCGCTCTGTGACAAAATTGTTTTCAATAAGGTTAAGGAAGGGTTGGGGGGGAAGGTACGGCTTATCTTGTCTGGAGCAGCACCTCTTGCTGTCCACATTGAAGAATATCTTAGGGTGGTGGCATGCTGTCATGTTCTTCAAGGATATGGCCTGACAGAAACCTGCGCGGGGACATTTGTTTCACTACCAAATGAGCCCAATATGTTGGGTACAGTGGGCCCCCCAGTACCCAATGTGGATGTTTGTCTAGAATCGGTTCCTGAAATGGGATATGATGCCCTTTCAAGCACACCCCGTGGAGAAATATGTGTTAAGGGGGAAACCCTATTCTCAGGGTACTACAAGCGTGAAGACCTAACAAATGAGGTCATGGTTGATGGGTGGTTCCACACAGGGGATATCGGCGAGTGGCAACCAAATGGAACCATGAAAATTGTTGATCGCAAGAAGAATATTTTCAAGCTTTCACAAGGAGAATATGTGGCAGTTGAAAACTTGGAGAATGTTTATGGTCTTGTTTCTCTTATTGACTCAATATGGGTATATGGGAATAGCTATGAGTCTTTCCTTGTTGCTGTTGTTAACCCAAACAAGCAAGCAGTTGAAAAATGGGCTGCTGCGAATGATATTTCTGGGGATTTTGATTCTTTATGTAAAAATCCCAAAGTGAAGGAGCATATACTTGGAGAGCTAACAAAGACTGGAAAAGATAAAAAGTTGAAAGGTTTTGAATTTGTCAAAGCTGTTCACCTTGACCCTGTGCCATTCGACATGGATCGAGACCTTCTCACCCCAACATTTAAGAAGAAAAGGCCACAGTTGCTGAAATATTACCAGGTATCTCCTTTGTTTCTCTGGAAATCTTCAAATTGTAATGGGACCCGCCCACCCACCCACCCACAAAGTTAG

Network for GWHGAAZE027492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	53	526	4.20E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.676
	SRR3591706	second leaf	0.353
	SRR3591707	mature leaf	0.041
	SRR3591708	Shoot apex	1.980
	SRR3591709	Stem	0.739
	SRR3591710	White floral bud	5.378
	SRR3591711	White flower	0.467
	SRR3591712	Green floral bud	10.878
	SRR3591713	Yellow flower	0.131
SRP173429	SRR8316895	Juvenile bud stage	10.617
	SRR8316896	Juvenile bud stage	28.080
	SRR8316897	Juvenile bud stage	11.758
	SRR8316894	Third green stage	8.198
	SRR8316900	Third green stage	12.602
	SRR8316901	Third green stage	15.408
	SRR8316898	Complete white stage	0.082
	SRR8316899	Complete white stage	0.190
	SRR8316903	Complete white stage	0.090
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.139
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.079
	SRR8316908	Gold flowering stage	0.025
SRP132670	SRR6706286	Control	5.575
	SRR6706287	Light intensity 50%	4.039
	SRR6706288	Light intensity 20%	4.214
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.464
	CNS0095593	Slightly white alabastrum(diploid) 2	6.114
	CNS0095594	Slightly white alabastrum(diploid) 3	16.158
	CNS0095595	Whole white alabastrum(diploid) 2	6.094
	CNS0095596	Whole white alabastrum(diploid) 3	7.033
	CNS0095597	Whole white alabastrum(diploid) 4	5.530
	CNS0095598	Silvery flower (diploied) 1	0.363
	CNS0095599	Silvery flower (diploied) 2	1.005
	CNS0095600	Silvery flower (diploied) 3	0.152
	CNS0095601	Golden flower (diploid) 1	0.352
	CNS0095602	Golden flower (diploid) 2	0.208
	CNS0095603	Golden flower (diploid) 3	0.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.608
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.561
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.278
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.632
	CNS0095610	Silvery flower (diploied) 1	0.486
	CNS0095611	Silvery flower (diploied) 2	0.765
	CNS0095612	Silvery flower (diploied) 3	0.992
	CNS0095613	Golden flower (tetraploid) 1	0.170
	CNS0095614	Golden flower (tetraploid) 2	0.157
	CNS0095615	Golden flower (tetraploid) 3	0.447
CRA001975	CRR073297	Stem 1	6.066
	CRR073298	Stem 2	5.226
	CRR073299	Stem 3	3.009
	CRR073300	Leaf 1	2.308
	CRR073301	Leaf 2	3.607
	CRR073302	Leaf 3	1.855
	CRR073303	Juvenile bud 1	1.566
	CRR073304	Juvenile bud 2	1.264
	CRR073305	Juvenile bud 3	0.363
	CRR073306	Third green 1	0.371
	CRR073307	Third green 2	0.822
	CRR073308	Third green 3	0.612
	CRR073309	Second white 1	0.362
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.051
	CRR073312	Silver flowering 1	0.995
	CRR073313	Silver flowering 2	1.148
	CRR073314	Silver flowering 3	0.660
	CRR073315	Gold flowering 1	0.734
	CRR073316	Gold flowering 2	0.051
	CRR073317	Gold flowering 3	0.446
	CRR073318	Tawny withering 1	0.582
	CRR073319	Tawny withering 2	0.533
	CRR073320	Tawny withering 3	0.794