Gene detail

Detail information of GWHGAAZE027602

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACZ34296.1	7.8689E-146	broad substrate reductase/dehydrogenase [Artemisia annua]
COG	YP_008149897.1	2E-46	hypothetical protein SCE1572_17400
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	1E-99	(+)-neomenthol dehydrogenase
trEMBL	tr\|D1MI43\|D1MI43_ARTAN	3E-146	Broad substrate reductase/dehydrogenase {ECO:0000313\|EMBL:ACZ34296.1}
TAIR10	AT3G61220.1	4E-75	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23403918	23407676	-
GWHAAZE00000008	mRNA	23403918	23407676	-
GWHAAZE00000008	exon	23403918	23404295	-
GWHAAZE00000008	exon	23404825	23405013	-
GWHAAZE00000008	exon	23405376	23405450	-
GWHAAZE00000008	exon	23406610	23406853	-
GWHAAZE00000008	exon	23407639	23407676	-
GWHAAZE00000008	CDS	23407639	23407676	-
GWHAAZE00000008	CDS	23406610	23406853	-
GWHAAZE00000008	CDS	23405376	23405450	-
GWHAAZE00000008	CDS	23404825	23405013	-
GWHAAZE00000008	CDS	23403918	23404295	-

Transcript Sequence
>GWHTAAZE027636 ATGGAAGAGAGCAATACCACTGATTCCTCAAAGACTAGGTGTGCAGTTGTAACCGGAGGGAACAAAGGAATTGGGCTTGAGATTTGTAGGCAGTTAGCATCAAATGGAATAAGAGTAATATTAACTGCAAGAGATGAGCAAAGGGGTATTAAAGCTGTTGAAGAACTTAAAGCCGGTGGACTCTTTGATGTTCTTTTTCATCAACTAGACCTTAAAGATTCTTCAAGCATTGCTTCATTTGCAAAATTTATTGGAACAAACTTCAGTAAACTTGATATTCTGGTGAATAATGCCGCAGAAATTGGAATTATTATAAATGCTGAAGCATTTAGAGCTTTCAAAAATGGAGCTGGATTTGATGAGGTGAATGATGAAAATGCGCACTTGTTAGGTGGAATTATAGAGCAGACATATGAAATGGCGAAAGAATGTCTCGAAACAAATTACTATGGAACTAAAAGAGTGACAGAAGCCCTTCTTCCCCTTCTTCAACTCTCCAATTCACCAAGAATAGTGAATCTTTCCTCCTATTATGGAGAACTATCGCTTATTAACAATGAAAAGGTTAAAGCAGAGCTACAAAATATTGACAACTTGACAGAAGAAAAAATCGATGAAATTTTGCAATGGTTCTTAAGGGATTTCAAGGAAGATAAGTTGAAGGCAAATGGTTGGCCTATTACTGTATCGGCTTATAAAGTTTCAAAAGCTTTTCTAAATGCATATACAAGACTCTTAGCGAAGAAATTCCCAAATATGCTTGTCAATTGCGTACATCCTGGGTACGTTAGAACGGATATCACACGCGACACTGGGCCCATGAGCACAGTGGAAGGTGCTAGAGCTCCAGTAATGTTGGCGTTGTTGCCTGATGATGGTCCTTCTGGTGTCTACTTTAATCAAATGAATGCATCTACTTTTTGA

Network for GWHGAAZE027602

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0175	GO:0000159 protein phosphatase type 2A complex GOslim:cellular_component GO:0005634 nucleus GOslim:cellular_component Transcription factor HB-KNOX family Transcription factor HB-KNOX Ubiquitin_F-box family Ubiquitin_F-box family Transcription factor SET family Transcription factor SET

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	14	183	1.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.754
	SRR3591706	second leaf	86.156
	SRR3591707	mature leaf	126.529
	SRR3591708	Shoot apex	54.107
	SRR3591709	Stem	48.295
	SRR3591710	White floral bud	23.721
	SRR3591711	White flower	45.121
	SRR3591712	Green floral bud	14.114
	SRR3591713	Yellow flower	44.641
SRP173429	SRR8316895	Juvenile bud stage	13.566
	SRR8316896	Juvenile bud stage	14.933
	SRR8316897	Juvenile bud stage	12.642
	SRR8316894	Third green stage	5.751
	SRR8316900	Third green stage	16.440
	SRR8316901	Third green stage	20.995
	SRR8316898	Complete white stage	3.347
	SRR8316899	Complete white stage	15.176
	SRR8316903	Complete white stage	4.063
	SRR8316902	Silver flowering stage	1.464
	SRR8316904	Silver flowering stage	1.589
	SRR8316905	Silver flowering stage	0.830
	SRR8316906	Gold flowering stage	1.313
	SRR8316907	Gold flowering stage	1.956
	SRR8316908	Gold flowering stage	1.893
SRP132670	SRR6706286	Control	5.552
	SRR6706287	Light intensity 50%	5.139
	SRR6706288	Light intensity 20%	5.535
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.448
	CNS0095593	Slightly white alabastrum(diploid) 2	28.549
	CNS0095594	Slightly white alabastrum(diploid) 3	22.126
	CNS0095595	Whole white alabastrum(diploid) 2	30.877
	CNS0095596	Whole white alabastrum(diploid) 3	21.758
	CNS0095597	Whole white alabastrum(diploid) 4	23.063
	CNS0095598	Silvery flower (diploied) 1	85.705
	CNS0095599	Silvery flower (diploied) 2	61.834
	CNS0095600	Silvery flower (diploied) 3	11.569
	CNS0095601	Golden flower (diploid) 1	68.826
	CNS0095602	Golden flower (diploid) 2	29.007
	CNS0095603	Golden flower (diploid) 3	28.484
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.430
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.660
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.125
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.186
	CNS0095610	Silvery flower (diploied) 1	4.662
	CNS0095611	Silvery flower (diploied) 2	10.820
	CNS0095612	Silvery flower (diploied) 3	4.023
	CNS0095613	Golden flower (tetraploid) 1	3.101
	CNS0095614	Golden flower (tetraploid) 2	4.189
	CNS0095615	Golden flower (tetraploid) 3	0.271
CRA001975	CRR073297	Stem 1	12.314
	CRR073298	Stem 2	9.150
	CRR073299	Stem 3	5.900
	CRR073300	Leaf 1	10.676
	CRR073301	Leaf 2	13.259
	CRR073302	Leaf 3	6.800
	CRR073303	Juvenile bud 1	2.386
	CRR073304	Juvenile bud 2	1.598
	CRR073305	Juvenile bud 3	2.213
	CRR073306	Third green 1	0.189
	CRR073307	Third green 2	0.304
	CRR073308	Third green 3	0.325
	CRR073309	Second white 1	0.308
	CRR073310	Second white 2	0.375
	CRR073311	Second white 3	0.035
	CRR073312	Silver flowering 1	0.108
	CRR073313	Silver flowering 2	0.417
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	54.171
	CRR073316	Gold flowering 2	55.704
	CRR073317	Gold flowering 3	36.787
	CRR073318	Tawny withering 1	17.093
	CRR073319	Tawny withering 2	22.352
	CRR073320	Tawny withering 3	8.237