Gene detail

Detail information of GWHGAAZE027603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002511824.1	1.3094E-109	carbonyl reductase, putative [Ricinus communis]
COG	YP_007148857.1	2E-28	short-chain alcohol dehydrogenase
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	8E-65	(+)-neomenthol dehydrogenase
trEMBL	tr\|B9RDN5\|B9RDN5_RICCO	5E-110	Carbonyl reductase, putative {ECO:0000313\|EMBL:EEF50493.1}
TAIR10	AT3G61220.1	3E-55	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23423596	23429184	-
GWHAAZE00000008	mRNA	23423596	23429184	-
GWHAAZE00000008	exon	23423596	23423724	-
GWHAAZE00000008	exon	23424252	23424440	-
GWHAAZE00000008	exon	23424804	23424878	-
GWHAAZE00000008	exon	23426042	23426277	-
GWHAAZE00000008	exon	23426398	23426491	-
GWHAAZE00000008	exon	23427148	23427336	-
GWHAAZE00000008	exon	23427698	23427772	-
GWHAAZE00000008	exon	23428942	23429184	-
GWHAAZE00000008	CDS	23428942	23429184	-
GWHAAZE00000008	CDS	23427698	23427772	-
GWHAAZE00000008	CDS	23427148	23427336	-
GWHAAZE00000008	CDS	23426398	23426491	-
GWHAAZE00000008	CDS	23426042	23426277	-
GWHAAZE00000008	CDS	23424804	23424878	-
GWHAAZE00000008	CDS	23424252	23424440	-
GWHAAZE00000008	CDS	23423596	23423724	-

Transcript Sequence
>GWHTAAZE027637 TGTGCAGTTGTAACCGGAGGGAACAACGGAATTGGGCTTGAGATTTGTAGGCAGTTAGCATCAAATGGAATAAGAGTAATATTAACTGCTAGAGATAAGAAAAGGGGTATTACAGCTGTTGAAGAACTTAAAGCCCGTGGACTCTTTGATGTTCTTTTTCATCAACTAGACCTTAAAGATTCTTCAACCATTGCTTCATTATCAAAATTTATTGGAGCAAACTTCAGTAAACTTGATATTCTGGTGAATAATGCCGCAGAAATTGGAATCATTATAAATGTTGAAGCATTTAGAGCTTTCAAAAATGGAGCTGGATTTGATGAGGTGAATGATGAAAATGCGCACTTATTGGGTGGAATTATAGAGCAGACATATGAAATGGCAAAAGAATGTCTCGAAACAAATTACTATGGAACTAAAAGAGTGACAGAAGCCCTTCTTCCCCTTCTTCAACTCTCCAATTCACCAAGAATAGTGAATCTTTCCTCCTATTATGGAGAACTATCGGTTAGTTCTTTAGGCGGACCAAGGTTTGAACCTTCTGCCCTCTATGAGGATGAGATCGTTCCGAACAAAAAAAAACCTTACATTAACTGCCAAATTATAACCGGAGGGAACAAAGGAATTGGGCTTGAGATTTGTAGGCAGTTAGCATCAAATGGAATAAGAGTAATATTAACTGCCAGAGATGAGAAAAGGGGTATTAAAGCTGTTGAAGAACTTAAAGCCCGTGGACTCTTTGATGTTCTTTTTCATCAACTAGACCTTAAAGATTCTTCAAGCATTGCTTCATTTGCAAAATTTATTGGAACAAACTTCAGTAAACTTGATATTCTGGTGAATAATGCCGCAGAAAGTGGAATTGTTATAAATGCTGAAGCATTTAGAGCTTTCAAAAATGGAGCTGGATTTGAGGAGGTGAATGATGAAAATGCGCACTTGTTGGGTGGAATTATAGAGCAGACATATGAATTGGCTGAAGAATGTCTCGAAACAAATTACTATGGAACTAAAAGAGTGACAGAAGCCCTTCTTCCCTTTCTTCAACTCTCCAATTCACCAAGAATAGTGAATCTTTCCTCCATTTATGGAGAACTATCGCTTATCAGCAATGAAAAGGTTAAAGCAGAGCTACAAAATATTGACAACTTAACAGAAGAAAAAATAGATGAAATTTTGCAATGGTTCTTAAGGGATTTCAAGGAAGATAAGTTGAAGGCAAATGGTTGA

Network for GWHGAAZE027603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	2	170	7.70E-24
PF00106.26	adh_short	201	368	2.30E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.083
	SRR3591706	second leaf	1.917
	SRR3591707	mature leaf	3.784
	SRR3591708	Shoot apex	1.073
	SRR3591709	Stem	4.274
	SRR3591710	White floral bud	0.708
	SRR3591711	White flower	1.743
	SRR3591712	Green floral bud	0.262
	SRR3591713	Yellow flower	1.581
SRP173429	SRR8316895	Juvenile bud stage	0.276
	SRR8316896	Juvenile bud stage	0.061
	SRR8316897	Juvenile bud stage	0.143
	SRR8316894	Third green stage	0.014
	SRR8316900	Third green stage	0.064
	SRR8316901	Third green stage	0.213
	SRR8316898	Complete white stage	0.089
	SRR8316899	Complete white stage	0.305
	SRR8316903	Complete white stage	0.121
	SRR8316902	Silver flowering stage	0.015
	SRR8316904	Silver flowering stage	0.040
	SRR8316905	Silver flowering stage	0.011
	SRR8316906	Gold flowering stage	0.004
	SRR8316907	Gold flowering stage	0.067
	SRR8316908	Gold flowering stage	0.075
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.013
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.042
	CNS0095593	Slightly white alabastrum(diploid) 2	0.063
	CNS0095594	Slightly white alabastrum(diploid) 3	0.055
	CNS0095595	Whole white alabastrum(diploid) 2	0.007
	CNS0095596	Whole white alabastrum(diploid) 3	0.060
	CNS0095597	Whole white alabastrum(diploid) 4	0.307
	CNS0095598	Silvery flower (diploied) 1	0.384
	CNS0095599	Silvery flower (diploied) 2	0.182
	CNS0095600	Silvery flower (diploied) 3	0.089
	CNS0095601	Golden flower (diploid) 1	0.402
	CNS0095602	Golden flower (diploid) 2	0.234
	CNS0095603	Golden flower (diploid) 3	0.303
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.017
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.067
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.044
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.025
	CNS0095610	Silvery flower (diploied) 1	0.011
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.004
	CNS0095613	Golden flower (tetraploid) 1	0.139
	CNS0095614	Golden flower (tetraploid) 2	0.056
	CNS0095615	Golden flower (tetraploid) 3	0.009
CRA001975	CRR073297	Stem 1	0.097
	CRR073298	Stem 2	0.056
	CRR073299	Stem 3	0.010
	CRR073300	Leaf 1	0.280
	CRR073301	Leaf 2	0.006
	CRR073302	Leaf 3	0.020
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.063
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.039
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.188
	CRR073316	Gold flowering 2	0.161
	CRR073317	Gold flowering 3	0.210
	CRR073318	Tawny withering 1	0.116
	CRR073319	Tawny withering 2	0.038
	CRR073320	Tawny withering 3	0.022