Gene detail

Detail information of GWHGAAZE027641

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU39024.1	5.6321E-147	hypothetical protein MIMGU_mgv1a022933mg [Erythranthe guttata]
COG	YP_004984622.1	6E-67	2-oxo/hydroxy acid reductase
Swissprot	tr\|Q9LE33\|HPR3_ARATH	1E-119	Glyoxylate/hydroxypyruvate reductase HPR3
trEMBL	tr\|A0A022RGA1\|A0A022RGA1_ERYGU	2E-147	Uncharacterized protein {ECO:0000313\|EMBL:EYU39024.1}
TAIR10	AT1G12550.1	1E-84	D-isomer specific 2-hydroxyacid dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	24353780	24355751	-
GWHAAZE00000008	mRNA	24353780	24355751	-
GWHAAZE00000008	exon	24353780	24354304	-
GWHAAZE00000008	exon	24355320	24355751	-
GWHAAZE00000008	CDS	24355320	24355751	-
GWHAAZE00000008	CDS	24353780	24354304	-

Transcript Sequence
>GWHTAAZE027675 ATGGCCTCTTCCCAAGAAAATCTGCCATTAGTCCTAATCCATCAACTCCCCAGATTCACAGTCTCTTTCAACCACTGGATCCAATCCAAATTCCGCCTCCTCGAATCCTCCGACCCGGATTTCCCGACCCTATCCAAATCCGTCCGGGTCATGCTCTGTGTGGCCCCCACTCCCGTCACCTCCGACACCTTAAACGAGTTCCCTTCTTTGGAGTGCGTGGTGGGTTCCACCGCCGGACTCGACCATATCGACCTCCCTGAGTGCCGGCGCCGGAACATCAGGGTTACTAGCGCCGGCGAGGCGTATTCCGAGGATGTAGCCGATTATGCGGTTGGTTTGTTGATTGATGTTTTCCGGAAGGTTTCGGCCGGTGATCGATTTGTGAGGGATGGGTTGTGGACGGTGAAGGGAGAATTCCCACTGGGTTCAAAGTTAGGGGGAAAAAGAATCGGGATTCTTGGACTTGGAAGCATTGGCTCATTGATAGCAAGGAGACTCGAGCCCTTTGGTTGCGTTATCAATTACAACTCGAGGAAGAAGAAGCCAAACACCTGTTATACTTACTATACAAACATTCTCGACCTTGCAGGTAATAGCAACGCTCTTATTGTCTGTTGTGCTTTAACAGACGAAACCCACCACATAATCAACAAGGACATAATGGCGGCTTTGGGGAAAAAAGGCATCATAATAAATGTCGGGCGTGGTGCCCTAATTGACGAGAAGGAATTAGTAAAGTTTCTTTTAAGTGGAGATATTGGCGGGGCCGGACTTGATGTTTACGAGAATGAACCTAGTATACCTGAAGAGTTATTTGTGTTGGATAATGTTGTGCTTTCTCCGCATAGAGCGATTGCGACCTCGGAATCATTTGAGAATCTAAGAGAGCTTATTGTTTGTAACTTGGAGGCGTTTTTCGAGAATAAGCCATTGCGGTGCGAGGTGAAGTTTGAATGA

Network for GWHGAAZE027641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00389.31	2-Hacid_dh	40	315	2.10E-18
PF02826.20	2-Hacid_dh_C	111	284	9.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15919	HPR2_3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0051287	molecular_function	NAD binding
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.880
	SRR3591706	second leaf	12.120
	SRR3591707	mature leaf	12.083
	SRR3591708	Shoot apex	15.256
	SRR3591709	Stem	11.969
	SRR3591710	White floral bud	35.696
	SRR3591711	White flower	26.262
	SRR3591712	Green floral bud	27.051
	SRR3591713	Yellow flower	14.550
SRP173429	SRR8316895	Juvenile bud stage	20.136
	SRR8316896	Juvenile bud stage	25.484
	SRR8316897	Juvenile bud stage	13.799
	SRR8316894	Third green stage	9.642
	SRR8316900	Third green stage	36.300
	SRR8316901	Third green stage	34.084
	SRR8316898	Complete white stage	23.532
	SRR8316899	Complete white stage	50.512
	SRR8316903	Complete white stage	34.103
	SRR8316902	Silver flowering stage	12.360
	SRR8316904	Silver flowering stage	16.004
	SRR8316905	Silver flowering stage	6.101
	SRR8316906	Gold flowering stage	17.212
	SRR8316907	Gold flowering stage	15.265
	SRR8316908	Gold flowering stage	20.160
SRP132670	SRR6706286	Control	33.484
	SRR6706287	Light intensity 50%	32.701
	SRR6706288	Light intensity 20%	33.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.311
	CNS0095593	Slightly white alabastrum(diploid) 2	25.161
	CNS0095594	Slightly white alabastrum(diploid) 3	19.046
	CNS0095595	Whole white alabastrum(diploid) 2	20.950
	CNS0095596	Whole white alabastrum(diploid) 3	17.994
	CNS0095597	Whole white alabastrum(diploid) 4	17.710
	CNS0095598	Silvery flower (diploied) 1	27.484
	CNS0095599	Silvery flower (diploied) 2	28.119
	CNS0095600	Silvery flower (diploied) 3	41.648
	CNS0095601	Golden flower (diploid) 1	28.707
	CNS0095602	Golden flower (diploid) 2	37.040
	CNS0095603	Golden flower (diploid) 3	37.176
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.119
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.475
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.644
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.218
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.502
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.271
	CNS0095610	Silvery flower (diploied) 1	32.202
	CNS0095611	Silvery flower (diploied) 2	35.425
	CNS0095612	Silvery flower (diploied) 3	19.045
	CNS0095613	Golden flower (tetraploid) 1	10.867
	CNS0095614	Golden flower (tetraploid) 2	24.769
	CNS0095615	Golden flower (tetraploid) 3	8.016
CRA001975	CRR073297	Stem 1	32.338
	CRR073298	Stem 2	32.837
	CRR073299	Stem 3	38.894
	CRR073300	Leaf 1	26.124
	CRR073301	Leaf 2	30.697
	CRR073302	Leaf 3	34.152
	CRR073303	Juvenile bud 1	34.614
	CRR073304	Juvenile bud 2	28.210
	CRR073305	Juvenile bud 3	36.025
	CRR073306	Third green 1	30.503
	CRR073307	Third green 2	27.874
	CRR073308	Third green 3	28.081
	CRR073309	Second white 1	12.814
	CRR073310	Second white 2	13.122
	CRR073311	Second white 3	7.376
	CRR073312	Silver flowering 1	6.996
	CRR073313	Silver flowering 2	7.870
	CRR073314	Silver flowering 3	6.895
	CRR073315	Gold flowering 1	17.457
	CRR073316	Gold flowering 2	17.360
	CRR073317	Gold flowering 3	18.129
	CRR073318	Tawny withering 1	11.839
	CRR073319	Tawny withering 2	6.404
	CRR073320	Tawny withering 3	11.173