Detail information of GWHGAAZE027760


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADJ67442.12.24202E-61ethylene response factor 13 [Actinidia deliciosa]
Swissprottr|Q8VZ91|EF103_ARATH4E-49Ethylene-responsive transcription factor 6
trEMBLtr|D8VD40|D8VD40_ACTDE8E-62Ethylene response factor 13 {ECO:0000313|EMBL:ADJ67442.1}
TAIR10AT4G17490.15E-34ethylene responsive element binding factor 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2736856027369498-
GWHAAZE00000008mRNA2736856027369498-
GWHAAZE00000008exon2736917527369498-
GWHAAZE00000008exon2736856027369144-
GWHAAZE00000008CDS2736917527369498-
GWHAAZE00000008CDS2736856027369144-
Transcript Sequence

Network for GWHGAAZE027760

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0150Transcription factor AP2/ERF-ERF family Transcription factor AP2/ERF-ERF
GO:0003700 DNA-binding transcription factor activity GOslim:molecular_function
GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process
GO:0003677 DNA binding GOslim:molecular_function
Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
GO:0004674 protein serine/threonine kinase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP21201701.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf125.036
SRR3591706second leaf60.292
SRR3591707mature leaf17.900
SRR3591708Shoot apex151.364
SRR3591709Stem127.632
SRR3591710White floral bud48.222
SRR3591711White flower59.004
SRR3591712Green floral bud27.682
SRR3591713Yellow flower4.221
SRP173429 SRR8316895Juvenile bud stage 74.473
SRR8316896Juvenile bud stage 21.652
SRR8316897Juvenile bud stage 29.133
SRR8316894Third green stage 36.876
SRR8316900Third green stage 41.996
SRR8316901Third green stage 52.589
SRR8316898Complete white stage 0.663
SRR8316899Complete white stage 83.724
SRR8316903Complete white stage 2.718
SRR8316902Silver flowering stage1.058
SRR8316904Silver flowering stage1.060
SRR8316905Silver flowering stage1.675
SRR8316906Gold flowering stage 9.885
SRR8316907Gold flowering stage 7.916
SRR8316908Gold flowering stage 5.170
SRP132670SRR6706286Control13.163
SRR6706287Light intensity 50%12.389
SRR6706288Light intensity 20%8.440
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.942
CNS0095593Slightly white alabastrum(diploid) 254.807
CNS0095594Slightly white alabastrum(diploid) 349.192
CNS0095595Whole white alabastrum(diploid) 213.553
CNS0095596Whole white alabastrum(diploid) 37.101
CNS0095597Whole white alabastrum(diploid) 416.532
CNS0095598Silvery flower (diploied) 1117.877
CNS0095599Silvery flower (diploied) 283.071
CNS0095600Silvery flower (diploied) 336.025
CNS0095601Golden flower (diploid) 1157.075
CNS0095602Golden flower (diploid) 241.304
CNS0095603Golden flower (diploid) 342.460
CNS0095604Slightly white alabastrum(tetraploid) 11.295
CNS0095605Slightly white alabastrum(tetraploid) 21.805
CNS0095606Slightly white alabastrum(tetraploid) 32.249
CNS0095607Whole white alabastrum(tetraploid) 12.749
CNS0095608Whole white alabastrum(tetraploid) 20.636
CNS0095609Whole white alabastrum(tetraploid) 30.850
CNS0095610Silvery flower (diploied) 15.709
CNS0095611Silvery flower (diploied) 23.300
CNS0095612Silvery flower (diploied) 313.134
CNS0095613Golden flower (tetraploid) 11.440
CNS0095614Golden flower (tetraploid) 22.331
CNS0095615Golden flower (tetraploid) 30.519
CRA001975CRR073297Stem 160.911
CRR073298Stem 292.634
CRR073299Stem 3134.158
CRR073300Leaf 1146.380
CRR073301Leaf 2185.963
CRR073302Leaf 3180.228
CRR073303Juvenile bud 1137.407
CRR073304Juvenile bud 280.584
CRR073305Juvenile bud 3206.307
CRR073306Third green 17.405
CRR073307Third green 26.736
CRR073308Third green 310.383
CRR073309Second white 10.800
CRR073310Second white 21.018
CRR073311Second white 31.231
CRR073312Silver flowering 10.725
CRR073313Silver flowering 21.102
CRR073314Silver flowering 31.570
CRR073315Gold flowering 155.183
CRR073316Gold flowering 237.653
CRR073317Gold flowering 396.638
CRR073318Tawny withering 144.384
CRR073319Tawny withering 237.883
CRR073320Tawny withering 382.806