Gene detail

Detail information of GWHGAAZE027773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08344.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8W4H1\|GAT26_ARATH	6E-109	GATA transcription factor 26
trEMBL	tr\|A0A068UJE3\|A0A068UJE3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313\|EMBL:CDP08344.1}
TAIR10	AT5G47140.1	3E-76	GATA transcription factor 27

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27598474	27604334	+
GWHAAZE00000008	mRNA	27598474	27604334	+
GWHAAZE00000008	exon	27598474	27598513	+
GWHAAZE00000008	exon	27600301	27600660	+
GWHAAZE00000008	exon	27601587	27602019	+
GWHAAZE00000008	exon	27603078	27603264	+
GWHAAZE00000008	exon	27603361	27603481	+
GWHAAZE00000008	exon	27604021	27604334	+
GWHAAZE00000008	CDS	27598474	27598513	+
GWHAAZE00000008	CDS	27600301	27600660	+
GWHAAZE00000008	CDS	27601587	27602019	+
GWHAAZE00000008	CDS	27603078	27603264	+
GWHAAZE00000008	CDS	27603361	27603481	+
GWHAAZE00000008	CDS	27604021	27604334	+

Transcript Sequence
>GWHTAAZE027807 ATGGGCAAGCAAGGACCTTGCCGTCACTGTGGTGTTACAAACACCCCTCTTTGGCGCAATGGGCCTCCAGAGAAGCCTATACTATGCAACGCATGTGGGTCCCGTTGGAGAACTAAAGGGACTCTTGTAAACTACACCCCTCTACATGCTCGGGCCGAACCTGACGAGTTTGAGGACTACAGGGTTTCTAGAGTGAAGAGCATATCTATTAAGAACAAAGTGGCAAAGGTGCTAAAAAGAAAGCATCATCAAGAAAATGAATTAGTTGGAGGATTTATCCCGGATTATAACCGTAAGGTTCTTGACGAAGATACAAGTAATAGATCAAGTTCCGGCTCTGCTATATCTAACTCTGAGAGCTGTGTCCAGCTTGGTAGTGCAGATGCAAGTGAATTGACAGGTCCAGCCCAATCCATTGTGTGGGATTCAATGGTACCTTCAAGAAAGAGGACATGTGTCAGTCGATCAAAGCCATCTTCAGTCGAGAAACTCACAAAAGATTTATGTACTATCTTACATGAACAGCAATCATATTTCTCTGCTTCTTCTGAGGAGGATTTACTTTTCGAGAGTGATAAGCCAATGGAATCTGTCGAATTTGGCCATGGAAGTGTACTTATTCGGCATCCGAGCTCAATAGCTAGAGAAGAAGAATCCGAAGCTAGCTCTCTTTCGGTTGATAATAAGCGACAACACCCCATAAACGAGGCTTACTCACGGTTGACTACCCTTAATGTACATAATAATAACAAGGACGTCAAATTTCCAGGCCTGGTTACTGAGAAAAGCAAGAAACCTATTGGACAGGGATTTGAACAAGAACCCATAAGAAGCTTCGAAAGCATGTTTGATAGTCCTCAATTCAACGAGAACCTATCCTCTTTCCAGAAGCTTCTTGCGGAAGGTGTTTTTGATCCGTCTTTATCAGCGGTTAAAAGTGACGGCTTTAGAACTTTAAAGAGGCTTGCTGTATGCAATATTGCAAAATCCAAATGGGTCGAACAATATAATCTACTCAAGGATGCAAAGAGTAAAGGTATTAATGGTGGATCCGTAGTTGGACAAGGACTTAATGGCTTTGCATCCGGTAATTCCGTGAATGTAAGGAGATCACGAGACGGCCAATTCCAAAATTTTCCAGGGGTAAAAACTACAATGAAGAGCCCGAAAAGAGCATCGACAAAAGCAAGTTACGAAAACAAGGAGCTCGTAGAAACCGACGGCAATTGCTTTAGTCCAAAAAGCCTATTTGCTTTGCCACCCGATAGTAGCTCGCTTATGCTCGAATCTTTCCAATTCGCAAATGATAATTCCGATCAAGACTTATTACTAGATGTTCCATCCCACAGCTCCTTCCCACAGGCTGAACTCCTCTTTCCATCTCCAAGTTTTGGTGCCTCGGCCCAAGCCAGTACTAGCAGTAGCTCGATATACCAAAATCTTGTTCATCCTTGA

Network for GWHGAAZE027773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.28	GATA	7	41	3.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.095
	SRR3591706	second leaf	14.917
	SRR3591707	mature leaf	28.260
	SRR3591708	Shoot apex	15.277
	SRR3591709	Stem	27.180
	SRR3591710	White floral bud	12.200
	SRR3591711	White flower	18.609
	SRR3591712	Green floral bud	15.580
	SRR3591713	Yellow flower	11.453
SRP173429	SRR8316895	Juvenile bud stage	8.997
	SRR8316896	Juvenile bud stage	9.290
	SRR8316897	Juvenile bud stage	3.813
	SRR8316894	Third green stage	5.169
	SRR8316900	Third green stage	12.477
	SRR8316901	Third green stage	11.695
	SRR8316898	Complete white stage	6.306
	SRR8316899	Complete white stage	32.796
	SRR8316903	Complete white stage	12.778
	SRR8316902	Silver flowering stage	4.512
	SRR8316904	Silver flowering stage	7.426
	SRR8316905	Silver flowering stage	2.982
	SRR8316906	Gold flowering stage	8.142
	SRR8316907	Gold flowering stage	7.961
	SRR8316908	Gold flowering stage	9.056
SRP132670	SRR6706286	Control	10.751
	SRR6706287	Light intensity 50%	10.941
	SRR6706288	Light intensity 20%	9.659
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.583
	CNS0095593	Slightly white alabastrum(diploid) 2	6.225
	CNS0095594	Slightly white alabastrum(diploid) 3	5.263
	CNS0095595	Whole white alabastrum(diploid) 2	7.820
	CNS0095596	Whole white alabastrum(diploid) 3	7.051
	CNS0095597	Whole white alabastrum(diploid) 4	6.313
	CNS0095598	Silvery flower (diploied) 1	14.332
	CNS0095599	Silvery flower (diploied) 2	9.526
	CNS0095600	Silvery flower (diploied) 3	14.327
	CNS0095601	Golden flower (diploid) 1	11.662
	CNS0095602	Golden flower (diploid) 2	14.463
	CNS0095603	Golden flower (diploid) 3	16.387
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.751
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.629
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.391
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.369
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.695
	CNS0095610	Silvery flower (diploied) 1	10.278
	CNS0095611	Silvery flower (diploied) 2	14.583
	CNS0095612	Silvery flower (diploied) 3	5.534
	CNS0095613	Golden flower (tetraploid) 1	3.291
	CNS0095614	Golden flower (tetraploid) 2	8.488
	CNS0095615	Golden flower (tetraploid) 3	5.533
CRA001975	CRR073297	Stem 1	10.971
	CRR073298	Stem 2	11.135
	CRR073299	Stem 3	11.516
	CRR073300	Leaf 1	14.511
	CRR073301	Leaf 2	10.447
	CRR073302	Leaf 3	8.590
	CRR073303	Juvenile bud 1	12.805
	CRR073304	Juvenile bud 2	10.450
	CRR073305	Juvenile bud 3	18.285
	CRR073306	Third green 1	4.404
	CRR073307	Third green 2	3.837
	CRR073308	Third green 3	5.465
	CRR073309	Second white 1	4.116
	CRR073310	Second white 2	2.598
	CRR073311	Second white 3	2.705
	CRR073312	Silver flowering 1	1.499
	CRR073313	Silver flowering 2	1.618
	CRR073314	Silver flowering 3	1.380
	CRR073315	Gold flowering 1	4.724
	CRR073316	Gold flowering 2	10.169
	CRR073317	Gold flowering 3	4.835
	CRR073318	Tawny withering 1	10.429
	CRR073319	Tawny withering 2	11.015
	CRR073320	Tawny withering 3	10.016