Gene detail

Detail information of GWHGAAZE027790

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008373630.1	4.8206E-113	PREDICTED: casein kinase II subunit beta-like isoform X2 [Malus domestica]
Swissprot	tr\|P40228\|CSK2B_ARATH	3E-105	Casein kinase II subunit beta
trEMBL	tr\|V4TJ24\|V4TJ24_9ROSI	3E-111	Uncharacterized protein {ECO:0000313\|EMBL:ESR53387.1}
TAIR10	AT4G17640.1	1E-71	casein kinase II beta chain 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27967418	27973389	-
GWHAAZE00000008	mRNA	27967418	27973389	-
GWHAAZE00000008	exon	27973218	27973389	-
GWHAAZE00000008	exon	27971985	27972203	-
GWHAAZE00000008	exon	27969863	27969972	-
GWHAAZE00000008	exon	27969311	27969410	-
GWHAAZE00000008	exon	27967591	27967678	-
GWHAAZE00000008	exon	27967418	27967511	-
GWHAAZE00000008	CDS	27973218	27973389	-
GWHAAZE00000008	CDS	27971985	27972203	-
GWHAAZE00000008	CDS	27969863	27969972	-
GWHAAZE00000008	CDS	27969311	27969410	-
GWHAAZE00000008	CDS	27967591	27967678	-
GWHAAZE00000008	CDS	27967418	27967511	-

Transcript Sequence
>GWHTAAZE027824 ATGTATAGAGAAAGAGGTGGATCTAAAGCACTAGATAAGCGGTCGGAGCTATTACCGCCGTCGGATTTGAGAGGATTGAATGGCAAAGATCGGTCGATGTTAACCGGCGGTTACAACAAGCTACTTGCCGACAAAAAGGATTCGCAAACTGCATCTTTGCCCGATAATAATGAGGAGTCCGAAACAGACAGTGAGGAGTCTGATGTTAGTGGTTCTGAAGGGGAAGATACTTCTTGGATCTCTTGGTTTTGCAATTTGCGTGGAAACGAGTTCTTCTGTGAAGTTGATGATGATTACATCCAAGATGATTTTAACCTATGTGGGTTAAGCAACCAAGTTCCCCATTATGATTATGCTCTTGATTTGATTCTGGACATTGAATCCTCTAACGGCGATACGTTTACAGAGGAACAGAACGAATCAGTCGAGTCAGCGGCAGAGATGCTTTATGGTCTAATTCATGTCCGATACATATTAACAACTAAAGGATTGGCTGCTATGCTGGAGAAGTACAAGAACGTTGAGTTTGGTAGATGCCCAAGAGTTTACTGCTATGGACAACCCTGCCTTCCCATTGGCCAGTCGGACATTCCTCGACAAAAAGTTGATGGAGCATATTTTGGGTCAACATCTACAAACCTGTTCATGATGACATACGCTCACATCAAACCACCAAAGACATTACAGAGCCTGCTGAGCCACGTGGGTGAGGGTTCTTTCCTAGCAGGCGTCATTCTTGCTTCTCTGTTAGCTTTGATAACGGAGATAGGTGTTACTTTATAA

Network for GWHGAAZE027790

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01214.19	CK_II_beta	78	201	8.80E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03115	CSNK2B	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005956	cellular_component	protein kinase CK2 complex
GO:0019887	molecular_function	protein kinase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.155
	SRR3591706	second leaf	32.599
	SRR3591707	mature leaf	30.393
	SRR3591708	Shoot apex	37.108
	SRR3591709	Stem	53.191
	SRR3591710	White floral bud	43.221
	SRR3591711	White flower	43.672
	SRR3591712	Green floral bud	49.218
	SRR3591713	Yellow flower	42.857
SRP173429	SRR8316895	Juvenile bud stage	28.242
	SRR8316896	Juvenile bud stage	38.699
	SRR8316897	Juvenile bud stage	22.920
	SRR8316894	Third green stage	20.025
	SRR8316900	Third green stage	65.200
	SRR8316901	Third green stage	60.973
	SRR8316898	Complete white stage	26.215
	SRR8316899	Complete white stage	80.767
	SRR8316903	Complete white stage	36.467
	SRR8316902	Silver flowering stage	25.481
	SRR8316904	Silver flowering stage	33.045
	SRR8316905	Silver flowering stage	15.434
	SRR8316906	Gold flowering stage	64.670
	SRR8316907	Gold flowering stage	60.205
	SRR8316908	Gold flowering stage	56.680
SRP132670	SRR6706286	Control	33.319
	SRR6706287	Light intensity 50%	32.944
	SRR6706288	Light intensity 20%	38.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.859
	CNS0095593	Slightly white alabastrum(diploid) 2	40.067
	CNS0095594	Slightly white alabastrum(diploid) 3	36.546
	CNS0095595	Whole white alabastrum(diploid) 2	36.861
	CNS0095596	Whole white alabastrum(diploid) 3	36.853
	CNS0095597	Whole white alabastrum(diploid) 4	32.458
	CNS0095598	Silvery flower (diploied) 1	30.913
	CNS0095599	Silvery flower (diploied) 2	33.600
	CNS0095600	Silvery flower (diploied) 3	44.731
	CNS0095601	Golden flower (diploid) 1	26.945
	CNS0095602	Golden flower (diploid) 2	40.075
	CNS0095603	Golden flower (diploid) 3	35.788
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.225
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.709
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.281
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.444
	CNS0095610	Silvery flower (diploied) 1	46.543
	CNS0095611	Silvery flower (diploied) 2	49.195
	CNS0095612	Silvery flower (diploied) 3	46.199
	CNS0095613	Golden flower (tetraploid) 1	32.568
	CNS0095614	Golden flower (tetraploid) 2	43.411
	CNS0095615	Golden flower (tetraploid) 3	44.983
CRA001975	CRR073297	Stem 1	40.746
	CRR073298	Stem 2	36.520
	CRR073299	Stem 3	37.504
	CRR073300	Leaf 1	45.084
	CRR073301	Leaf 2	44.409
	CRR073302	Leaf 3	44.946
	CRR073303	Juvenile bud 1	51.904
	CRR073304	Juvenile bud 2	42.325
	CRR073305	Juvenile bud 3	54.698
	CRR073306	Third green 1	25.070
	CRR073307	Third green 2	25.119
	CRR073308	Third green 3	26.169
	CRR073309	Second white 1	32.397
	CRR073310	Second white 2	29.911
	CRR073311	Second white 3	30.694
	CRR073312	Silver flowering 1	20.617
	CRR073313	Silver flowering 2	28.161
	CRR073314	Silver flowering 3	20.356
	CRR073315	Gold flowering 1	18.435
	CRR073316	Gold flowering 2	26.164
	CRR073317	Gold flowering 3	22.391
	CRR073318	Tawny withering 1	39.874
	CRR073319	Tawny withering 2	34.070
	CRR073320	Tawny withering 3	40.848