Gene detail

Detail information of GWHGAAZE027801

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011070287.1	2.7624E-105	PREDICTED: putative casein kinase II subunit beta-4 isoform X1 [Sesamum indicum]
Swissprot	tr\|P40229\|CSK2C_ARATH	3E-97	Casein kinase II subunit beta'
trEMBL	tr\|A0A022PQ53\|A0A022PQ53_ERYGU	3E-102	Uncharacterized protein {ECO:0000313\|EMBL:EYU17866.1}
TAIR10	AT4G17640.1	1E-78	casein kinase II beta chain 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28624902	28631137	+
GWHAAZE00000008	mRNA	28624902	28631137	+
GWHAAZE00000008	exon	28624902	28624994	+
GWHAAZE00000008	exon	28625290	28625465	+
GWHAAZE00000008	exon	28626478	28626700	+
GWHAAZE00000008	exon	28628709	28628818	+
GWHAAZE00000008	exon	28629271	28629579	+
GWHAAZE00000008	exon	28631003	28631137	+
GWHAAZE00000008	five_prime_UTR	28624902	28624994	+
GWHAAZE00000008	five_prime_UTR	28625290	28625465	+
GWHAAZE00000008	five_prime_UTR	28626478	28626510	+
GWHAAZE00000008	CDS	28626511	28626700	+
GWHAAZE00000008	CDS	28628709	28628818	+
GWHAAZE00000008	CDS	28629271	28629579	+
GWHAAZE00000008	CDS	28631003	28631137	+

Transcript Sequence
>GWHTAAZE027835 GCAAAAGTACACATAGATTCCCCTCATCCTCAACCAAAGCCAGAGCCTAGAGAGAGAGAGTTTGTTACCGCCGGTACATCGGAAATATCACCGAGGCATGTATAGAGAAAGAGGTGGATCTAAAGCACTAGATAAGCGGTCGGAGCTATTACCGCCGTCGGATTTGAGAGGATTGAATGGCAAAGATCGGTCGATGTTAACCGGCGGTTACAACAAGCTACTTGCCGACAAAAAGGATTCGCAAACTGCATCTTTGCCCGATAATAATGTAGAGGAGTCCGAAACAGACAGTGAGGAGTCTGATGTTAGTGGTTCTGAAGGGGAAGATACTTCTTGGATCTCTTGGTTTTGCAATTTGGCGTGGAAACGAGTTCTTCTGTGAAGTTGATGATGATTACATCCAAGATGATTTTAACCTATGTGGGTTAAGCAACCAAGTTCCCCATTATGATTATGCTCTTGATTTGATTCTGGACATTGAATCCTCTAACGGCGATACGTTTACAGAGGAACAGAACGAATCAGTCGAGTCAGCGGCAGAGATGCTTTATGGTCTAATTCATGTCCGATACATATTAACAACTAAAGGATTGGCTGCTATGCTGGAGAAGTACAAGAACGTTGAGTTTGGTAGATGCCCAAGAGTTTACTGCTATGGACAACCCTGCCTTCCCATTGGCCAGTCGGACATTCCTCGACAAAGTACTGTAAAAATCTATTGTCCCAAGTGTGAGGATATTTATACCCCTCGATCCAGGTTCCAAGATAGTATCCTTTTATTCAAATATTTTCAAGCACTTGGTATTTCCACCTGCTCAGCTTTTATTCATTACATAATGCATATATATAGGACAGGTATGTATGGGAAGTGCTCTGCTCTCTCCATATATATGTATCTTAGTCCATCCCTGGTAGAAGTTGATGGAGCATATTTTGGGTCAACGTCTACAAACCTGTTCATGATGACATACGCTCACATCAAACCACCAAAGACATTACAGAGGTATGTTCCTAGAGTGTTTGGTTTCAAGGTCCACAAGCCCTAA

Network for GWHGAAZE027801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01214.19	CK_II_beta	19	155	2.50E-57
PF01214.19	CK_II_beta	194	243	2.30E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03115	CSNK2B	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005956	cellular_component	protein kinase CK2 complex
GO:0019887	molecular_function	protein kinase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.396
	SRR3591706	second leaf	16.867
	SRR3591707	mature leaf	10.153
	SRR3591708	Shoot apex	17.242
	SRR3591709	Stem	25.646
	SRR3591710	White floral bud	21.890
	SRR3591711	White flower	25.335
	SRR3591712	Green floral bud	29.774
	SRR3591713	Yellow flower	23.923
SRP173429	SRR8316895	Juvenile bud stage	15.848
	SRR8316896	Juvenile bud stage	21.727
	SRR8316897	Juvenile bud stage	9.931
	SRR8316894	Third green stage	11.393
	SRR8316900	Third green stage	38.696
	SRR8316901	Third green stage	33.605
	SRR8316898	Complete white stage	13.560
	SRR8316899	Complete white stage	41.379
	SRR8316903	Complete white stage	18.695
	SRR8316902	Silver flowering stage	15.524
	SRR8316904	Silver flowering stage	19.210
	SRR8316905	Silver flowering stage	10.130
	SRR8316906	Gold flowering stage	32.047
	SRR8316907	Gold flowering stage	30.742
	SRR8316908	Gold flowering stage	28.698
SRP132670	SRR6706286	Control	23.315
	SRR6706287	Light intensity 50%	23.749
	SRR6706288	Light intensity 20%	25.630
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.154
	CNS0095593	Slightly white alabastrum(diploid) 2	20.385
	CNS0095594	Slightly white alabastrum(diploid) 3	19.067
	CNS0095595	Whole white alabastrum(diploid) 2	21.478
	CNS0095596	Whole white alabastrum(diploid) 3	23.462
	CNS0095597	Whole white alabastrum(diploid) 4	19.196
	CNS0095598	Silvery flower (diploied) 1	18.193
	CNS0095599	Silvery flower (diploied) 2	17.580
	CNS0095600	Silvery flower (diploied) 3	24.444
	CNS0095601	Golden flower (diploid) 1	16.050
	CNS0095602	Golden flower (diploid) 2	21.166
	CNS0095603	Golden flower (diploid) 3	20.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.396
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.308
	CNS0095610	Silvery flower (diploied) 1	16.589
	CNS0095611	Silvery flower (diploied) 2	17.896
	CNS0095612	Silvery flower (diploied) 3	14.858
	CNS0095613	Golden flower (tetraploid) 1	11.181
	CNS0095614	Golden flower (tetraploid) 2	16.278
	CNS0095615	Golden flower (tetraploid) 3	12.393
CRA001975	CRR073297	Stem 1	20.064
	CRR073298	Stem 2	19.990
	CRR073299	Stem 3	15.047
	CRR073300	Leaf 1	21.938
	CRR073301	Leaf 2	23.043
	CRR073302	Leaf 3	21.429
	CRR073303	Juvenile bud 1	25.113
	CRR073304	Juvenile bud 2	19.371
	CRR073305	Juvenile bud 3	21.223
	CRR073306	Third green 1	13.999
	CRR073307	Third green 2	11.789
	CRR073308	Third green 3	12.384
	CRR073309	Second white 1	16.011
	CRR073310	Second white 2	12.432
	CRR073311	Second white 3	11.731
	CRR073312	Silver flowering 1	14.623
	CRR073313	Silver flowering 2	10.566
	CRR073314	Silver flowering 3	11.445
	CRR073315	Gold flowering 1	11.084
	CRR073316	Gold flowering 2	14.990
	CRR073317	Gold flowering 3	10.251
	CRR073318	Tawny withering 1	12.139
	CRR073319	Tawny withering 2	17.539
	CRR073320	Tawny withering 3	15.558