Gene detail

Detail information of GWHGAAZE027818

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007209356.1	4.7525E-171	hypothetical protein PRUPE_ppa008666mg [Prunus persica]
Swissprot	tr\|Q9SLH7\|PER20_ARATH	1E-147	Peroxidase 20 (Precursor)
trEMBL	tr\|M5WUU7\|M5WUU7_PRUPE	2E-171	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10555.1}
TAIR10	AT2G35380.1	2E-113	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28982346	28989713	+
GWHAAZE00000008	mRNA	28982346	28989713	+
GWHAAZE00000008	exon	28982346	28982591	+
GWHAAZE00000008	exon	28983089	28983280	+
GWHAAZE00000008	exon	28984982	28985147	+
GWHAAZE00000008	exon	28989292	28989713	+
GWHAAZE00000008	CDS	28982346	28982591	+
GWHAAZE00000008	CDS	28983089	28983280	+
GWHAAZE00000008	CDS	28984982	28985147	+
GWHAAZE00000008	CDS	28989292	28989713	+

Transcript Sequence
>GWHTAAZE027852 ATGGGTTATACGAGAATAATAGTAGTTGTTGTTGTATTAATATTGATGAAATTATACGAAGGTGAAGGAAGTTTATTGAGTGATGGTGATGAAACTGATGGATCACCTCTTGTTCTTGATTACTATAAAGAAAAATGTCCTCTTGTGGAAGAGATAGTTGTACGTGTAGTTGCAGTGGCTGTACTTAAAGATCCTCGCATGGCTGCCTCTCTTCTTCGCCTCCATTTCCATGATTGCTTTGTCATGGGATGTGATGCGTCAGTATTGCTCGACGATTTTGAAGGAATAATAAGCGAAAAACAAGCCGGACCAAACCTAGATTCACTAAGAGGATTCGAGGTGATTGATGAAATAAAGTACTTATTGGAGGAGGCATGTCCTTATACCGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCAGTTGTTTTGAGAGGTGGACCCGGATGGGATGTTTACCTAGGGAGGAAAGATTCTCTAAAAGCAAGCCTCATTGATGCCAACCAATACATACCTTCCCCTAATTTCACACTGGAGGCCCTCATTGAGAATTTTCATCAGCAGGGTCTTGACGTTGGAGACTTGGTTACTTTATCAGGTAGTCACACAATTGGAAAAGCAAGATGTGTGAGCTTTAGACAAAGAATCTATGACCAAGACCATGAAGAATTCAACTTGTACCACCAAAAAAAACCAATTTTTCGACGAATTCTACGGTCCATATGCCCGGAATCAGGGAGAGATGATGAGGTGACCCCGCTCGACTATGTGACCCCGGCCCAGTTCGATAATCACTATTACCACAACATTATTCAAGGAGAAGGATTGTTGGGAACTGATAATGTGTTAGTAACTCAAGATCTTGAAGGGGAGATAAGAAAACAAGTGTGGAAGTATGCATTTGACGAAAAATATTTTTTCAAGTCCTTTGCTAAGTCAATGATCAAGATGGGGAATATACATGTACTCACTGGAGAGGAGGGGCAAATTAGGAAGAATTGTAGGTTTGTGAATGTATGA

Network for GWHGAAZE027818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	57	302	7.80E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.029
	SRR8316896	Juvenile bud stage	0.203
	SRR8316897	Juvenile bud stage	0.197
	SRR8316894	Third green stage	0.027
	SRR8316900	Third green stage	0.242
	SRR8316901	Third green stage	0.285
	SRR8316898	Complete white stage	0.126
	SRR8316899	Complete white stage	0.845
	SRR8316903	Complete white stage	0.476
	SRR8316902	Silver flowering stage	0.300
	SRR8316904	Silver flowering stage	0.486
	SRR8316905	Silver flowering stage	0.190
	SRR8316906	Gold flowering stage	0.335
	SRR8316907	Gold flowering stage	0.516
	SRR8316908	Gold flowering stage	0.793
SRP132670	SRR6706286	Control	0.124
	SRR6706287	Light intensity 50%	0.276
	SRR6706288	Light intensity 20%	0.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.093
	CNS0095593	Slightly white alabastrum(diploid) 2	0.041
	CNS0095594	Slightly white alabastrum(diploid) 3	0.057
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.052
	CNS0095597	Whole white alabastrum(diploid) 4	0.154
	CNS0095598	Silvery flower (diploied) 1	0.035
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.062
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.083
	CNS0095610	Silvery flower (diploied) 1	0.982
	CNS0095611	Silvery flower (diploied) 2	0.048
	CNS0095612	Silvery flower (diploied) 3	0.468
	CNS0095613	Golden flower (tetraploid) 1	2.863
	CNS0095614	Golden flower (tetraploid) 2	4.431
	CNS0095615	Golden flower (tetraploid) 3	0.536
CRA001975	CRR073297	Stem 1	0.139
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.003
	CRR073301	Leaf 2	0.177
	CRR073302	Leaf 3	0.177
	CRR073303	Juvenile bud 1	0.041
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.214
	CRR073306	Third green 1	0.039
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.016
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.079
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.055
	CRR073317	Gold flowering 3	0.050
	CRR073318	Tawny withering 1	21.695
	CRR073319	Tawny withering 2	7.956
	CRR073320	Tawny withering 3	41.685