Detail information of GWHGAAZE027827


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP12995.15.5274E-171unnamed protein product [Coffea canephora]
Swissprottr|Q8RX22|MIP1_ARATH7E-122MND1-interacting protein 1
trEMBLtr|A0A068UWR5|A0A068UWR5_COFCA2E-171Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313|EMBL:CDP12995.1}
TAIR10AT2G35330.23E-99RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2916792329171623-
GWHAAZE00000008mRNA2916792329171623-
GWHAAZE00000008exon2916792329168411-
GWHAAZE00000008exon2917102729171623-
GWHAAZE00000008CDS2917102729171623-
GWHAAZE00000008CDS2916792329168411-
Transcript Sequence

Network for GWHGAAZE027827

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0145GO:0009379 Holliday junction helicase complex GOslim:cellular_component
GO:0009378 four-way junction helicase activity GOslim:molecular_function
GO:0006310 DNA recombination GOslim:biological_process
GO:0006281 DNA repair GOslim:biological_process
Ubiquitin_U-box family Ubiquitin_U-box family
Ubiquitin_RING family Ubiquitin_RING family


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_33053522.70E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.846
SRR3591706second leaf10.371
SRR3591707mature leaf11.251
SRR3591708Shoot apex12.644
SRR3591709Stem14.005
SRR3591710White floral bud12.914
SRR3591711White flower18.447
SRR3591712Green floral bud15.111
SRR3591713Yellow flower12.090
SRP173429 SRR8316895Juvenile bud stage 11.995
SRR8316896Juvenile bud stage 13.122
SRR8316897Juvenile bud stage 8.287
SRR8316894Third green stage 6.024
SRR8316900Third green stage 15.519
SRR8316901Third green stage 14.627
SRR8316898Complete white stage 5.206
SRR8316899Complete white stage 18.108
SRR8316903Complete white stage 11.878
SRR8316902Silver flowering stage9.430
SRR8316904Silver flowering stage12.895
SRR8316905Silver flowering stage5.035
SRR8316906Gold flowering stage 23.246
SRR8316907Gold flowering stage 17.603
SRR8316908Gold flowering stage 25.375
SRP132670SRR6706286Control20.112
SRR6706287Light intensity 50%17.774
SRR6706288Light intensity 20%19.071
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.340
CNS0095593Slightly white alabastrum(diploid) 28.447
CNS0095594Slightly white alabastrum(diploid) 39.487
CNS0095595Whole white alabastrum(diploid) 27.263
CNS0095596Whole white alabastrum(diploid) 36.898
CNS0095597Whole white alabastrum(diploid) 46.517
CNS0095598Silvery flower (diploied) 116.832
CNS0095599Silvery flower (diploied) 214.346
CNS0095600Silvery flower (diploied) 321.218
CNS0095601Golden flower (diploid) 112.025
CNS0095602Golden flower (diploid) 217.093
CNS0095603Golden flower (diploid) 318.700
CNS0095604Slightly white alabastrum(tetraploid) 113.657
CNS0095605Slightly white alabastrum(tetraploid) 211.047
CNS0095606Slightly white alabastrum(tetraploid) 323.983
CNS0095607Whole white alabastrum(tetraploid) 110.549
CNS0095608Whole white alabastrum(tetraploid) 27.808
CNS0095609Whole white alabastrum(tetraploid) 319.195
CNS0095610Silvery flower (diploied) 139.852
CNS0095611Silvery flower (diploied) 230.495
CNS0095612Silvery flower (diploied) 320.857
CNS0095613Golden flower (tetraploid) 114.988
CNS0095614Golden flower (tetraploid) 235.406
CNS0095615Golden flower (tetraploid) 313.815
CRA001975CRR073297Stem 117.396
CRR073298Stem 216.764
CRR073299Stem 317.698
CRR073300Leaf 120.481
CRR073301Leaf 220.972
CRR073302Leaf 39.214
CRR073303Juvenile bud 118.033
CRR073304Juvenile bud 212.309
CRR073305Juvenile bud 324.332
CRR073306Third green 14.987
CRR073307Third green 23.641
CRR073308Third green 35.962
CRR073309Second white 15.730
CRR073310Second white 27.050
CRR073311Second white 37.705
CRR073312Silver flowering 15.490
CRR073313Silver flowering 26.613
CRR073314Silver flowering 36.574
CRR073315Gold flowering 15.971
CRR073316Gold flowering 212.485
CRR073317Gold flowering 37.917
CRR073318Tawny withering 111.875
CRR073319Tawny withering 212.185
CRR073320Tawny withering 313.045